Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_14299
Subject:
XR_938776.2
Aligned Length:
3392
Identities:
1259
Gaps:
2131

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGGCTGGCCAGGCTTCAGTCACAACACGGTGGGGCTCCCTGGCTGCGCCCGGCCCGGCAGCTACGGGCCCAGCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCTGGTGGCGGCGCTGAGGGGTCGCCGAGAGGGGCCCGGCGGCGTCTGCGGGGGCCGCTCCCTCGGTGGGCCGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGGCGAGGCATGAGCGCGGGCTCCCCCTGCCTCCGGAGCGCCGGCGGGGGACCGGGGGGCAGGAGATGTGCCTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCCTTAGCGGCCCAGGAAGCAGCATGCACCCCGATGCGACCGACAGTGGCGGCGCCGGCCCCAGCCCCGCGCGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCCGCAGGCGCCGGCGGCCGTCCTGTCTCGGGCTTCAGGGGCGAGCGGCGGCCGGAGTCCCCGGGGGACGCGGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGCAGCAGCAGCGGCGGCGCCGGGGGCCCCGGGCGGCCGGAGCTGGTGGAAGCCCGTGGCGGTGGCCGCACTCG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCGCCGTGGCCCTCTCCTTCCTGGGGCCCGGCAGCGGGGAGGCGGCGGGGGCCGCGGGGCTGAGCTCCGTCCTG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TTCAGGCTCAGCCTGTACCTGAGCTGCGCGGCGGCCGCCTTCCTGCTGGGGATCCTGTTTGCCCTCGTCTGCCG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GAGCCCGCGCGCCCAGCCGCCCGACTTCGCCGCCGCCTGGAGCCGGCTGGCCGCGACCTCAGCCGCCCGCCGCC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CGCCGGGGAGTCCTGTGTATGGAAACTCACATGAGTCAGCTCAGTCTAGAAGGGTAGTAATTTCTCATAATATG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GATAAAGCTCTGAAAGAAGTGTTCGACTACAGTTATAGAGATTACATTCTGTCCTGGTATGGAAACCTCAGCAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGATGAGGGACAACTTTACCATCTGCTCTTGGAAGACTTTTGGGAAATTGCCAGACAGCTGCACCACAGACTGA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GTCACGTGGATGTGGTTAAAGTTGTCTGCAATGATGTTGTGAGGACTTTACTCACTCATTTCTGTGACCTGAAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GCTGCCAATGCCAGACATGAAGAACAGCCAAGACCTTTTGTGTTGCACGCATGCTTGAGGAACTCAGATGATGA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AGTAAGATTTCTACAAACGTGTTCTCGGGTTCTGGTGTTTTGTCTCCTCCCCTCAAAGGATGTGCAGTCTCTCA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GCTTACGTATAATGCTTGCAGAAATTCTCACAACAAAAGTCTTGAAGCCGGTAGTGGAGTTACTGAGTAATCCA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GATTACATTAACCAAATGCTGCTTGCCCAGCTGGCGTACAGAGAGCAAATGAATGAGCATCACAAGAGAGCCTA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CACCTATGCCCCCTCTTACGAGGACTTCATCAAGCTCATTAACAGCAACTCTGATGTGGAGTTCTTGAAGCAAC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TAAGGGAAAGCGTACAAACATCAGCCCTCCTGATTCTTGAACCGAACTCAGCACTTGCAAAGTCGTATCCTCCT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CTGGAGAAAGAAAACCGAGTGAGTGCCAGGTATCAAATTGTAGTGGAAATAATCCAGGCGACTACAATTAGCAG  1480

Query    1  -------------------------------------------ATGAAAGCTGATCTCCTGAGGGCCAGGAACA  31
                                                       |||||||||||||||||||||||||||||||
Sbjct 1481  CTTTCCCCAACTGAAGAGGCACAAAGGTAAAGAAACTGCGGCAATGAAAGCTGATCTCCTGAGGGCCAGGAACA  1554

Query   32  TGAAGAGGTACATCAACCAACTGACTGTGGCAAAGAAGCAGTGTGAGAAGAGAATCCGAATCCTGGGAGGCCCT  105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  TGAAGAGGTACATCAACCAACTGACTGTGGCAAAGAAGCAGTGTGAGAAGAGAATCCGAATCCTGGGAGGCCCT  1628

Query  106  GCCTATGACCAGCAAGAGGATGGGGCCCTGGATGAGGGGGAAGGGCCTCAAAGCCAGA----------------  163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
Sbjct 1629  GCCTATGACCAGCAAGAGGATGGGGCCCTGGATGAGGGGGAAGGGCCTCAAAGCCAGAAGCAGAAGCTACAGAT  1702

Query  164  --------------------AGATTCTTCAGTTTGAAGATATCTTGGCCAATACGTTCTACCGAGAGCACTTTG  217
                                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  AGAAGGTTCAATATCTCCACAGATTCTTCAGTTTGAAGATATCTTGGCCAATACGTTCTACCGAGAGCACTTTG  1776

Query  218  GAATGTACATGGAAAGGATGGACAAAAGAGCTCTGATTAGTTTTTGGGAATCTGTGGAACATTTAAAGAATGCT  291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GAATGTACATGGAAAGGATGGACAAAAGAGCTCTGATTAGTTTTTGGGAATCTGTGGAACATTTAAAGAATGCT  1850

Query  292  AACAAGAATGAAATTCCACAATTAGTTGGTGAAATTTATCAGAATTTCTTTGTGGAGAGCAAAGAAATATCTGT  365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  AACAAGAATGAAATTCCACAATTAGTTGGTGAAATTTATCAGAATTTCTTTGTGGAGAGCAAAGAAATATCTGT  1924

Query  366  GGAAAAATCACTTTACAAAGAAATTCAGCAGTGTCTTGTAGGAAATAAAGGTATTGAAGTATTCTACAAAATCC  439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  GGAAAAATCACTTTACAAAGAAATTCAGCAGTGTCTTGTAGGAAATAAAGGTATTGAAGTATTCTACAAAATCC  1998

Query  440  AGGAAGATGTTTATGAGACCCTAAAGGACAGGTATTACCCTTCATTTATTGTCAGTGACCTGTATGAGAAATTG  513
            ||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  AGGAAGATGTTTATGAGACCCTAAAGGATAGGTATTACCCTTCATTTATTGTCAGTGACCTGTATGAGAAATTG  2072

Query  514  TTGATAAAAGAGGAAGAAAAACATGCCTCACAGATGATTTCCAACAAGGATGAGATGGGCCCAAGAGATGAGGC  587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  TTGATAAAAGAGGAAGAAAAACATGCCTCACAGATGATTTCCAACAAGGATGAGATGGGCCCAAGAGATGAGGC  2146

Query  588  TGGTGAGGAAGCCGTGGATGATGGTACCAATCAGATCAATGAACAAGCCAGTTTTGCTGTAAACAAACTGCGAG  661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  TGGTGAGGAAGCCGTGGATGATGGTACCAATCAGATCAATGAACAAGCCAGTTTTGCTGTAAACAAACTGCGAG  2220

Query  662  AACTAAATGAGAAACTTGAATATAAAAGGCAAGCTCTAAATTCTATTCAAAATGCACCAAAACCTGACAAGAAG  735
            |||||||||||||||||||||||||                                              |||
Sbjct 2221  AACTAAATGAGAAACTTGAATATAA----------------------------------------------AAG  2248

Query  736  ATTGTTTCCAAGTTGAAGGATGAAATAATCCTAATAGAGAAAGAACGCACAGACCTTCAGCTGCACATAGCAAG  809
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 2249  ATTGTTTCCAAGTTGAAGGATGAAATAATCCTAATAGAGAAAGAACGCACAGACCTTCAGCTGCACATGGCAAG  2322

Query  810  AACGGATTGGTGGTGTGAAAACCTTGGCATGTGGAAAGCCTCCATCACCAGTGGAGAGGTTACAGAAGAGAATG  883
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2323  AACGGATTGGTGGTGTGAAAACCTTGGCATGTGGAAAGCCTCCATCACCAGTGGAGAGGTTACAGAAGAGAATG  2396

Query  884  GTGAGCAATTGCCATGTTACTTTGTCATGGTAAGCCTACAAGAAGTTGGAGGAGTTGAAACTAAGAACTGGACG  957
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2397  GTGAGCAATTGCCATGTTACTTTGTCATGGTAAGCCTACAAGAAGTTGGAGGAGTTGAAACTAAGAACTGGACG  2470

Query  958  GTCCCCAGAAGGCTCAGCGAGTTTCAGAATTTACACCGGAAACTCAGTGAGTGCGTCCCTTCTTTAAAAAAAGT  1031
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2471  GTCCCCAGAAGGCTCAGCGAGTTTCAGAATTTACACCGGAAACTCAGTGAGTGCGTCCCTTCTTTAAAAAAAGT  2544

Query 1032  CCAGTTGCCTTCTCTTAGCAAGCTGCCTTTCAAATCTATAGATCAAAAGTTTATGGAAAAGTCGAAGAATCAAT  1105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2545  CCAGTTGCCTTCTCTTAGCAAGCTGCCTTTCAAATCTATAGATCAAAAGTTTATGGAAAAGTCGAAGAATCAAT  2618

Query 1106  TAAATAAGTTTTTAC-----------------------------------------------------------  1120
            |||||||||||||||                                                           
Sbjct 2619  TAAATAAGTTTTTACAGAATCTGCTTTCAGATGAAAGACTGTGTCAGAGTGAAGCACTTTATGCCTTCTTGAGC  2692

Query 1121  --------------------------------------------------------------------------  1120
                                                                                      
Sbjct 2693  CCTTCTCCTGACTACCTCAAGGTTATCGACGTGCAGGGGAAAAAAAATTCTTTTTCATTATCCTCATTTTTGGA  2766

Query 1121  --------------------------------AGGAGGAGACAGAGGAGGACAGTGACCTGTCAGATTATGGTG  1162
                                            ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2767  AAGACTTCCTCGCGACTTCTTCTCCCACCAGGAGGAGGAGACAGAGGAGGACAGTGACCTGTCAGATTATGGTG  2840

Query 1163  ATGATGTGGATGGGAGGAAAGACGCCTTGGCTGAACCATGTTTCATGTTGATTGGGGAGATTTTTGAACTTCGA  1236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2841  ATGATGTGGATGGGAGGAAAGACGCCTTGGCTGAACCATGTTTCATGTTGATTGGGGAGATTTTTGAACTTCGA  2914

Query 1237  GGAATGTTTAAATGGGTGAGAAGAACATTAATTGCCCTCGTTCAGGTCACTTTTGGAAGAACCATCAACAAACA  1310
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct 2915  GGAATGTTTAAATGGGTGAGAAGAACATTAATTGCCCTCGTTCAGGTCACTTTTGGAAGAACCATCAACAA---  2985

Query 1311  AATCCGGGACACAGTCAGCTGGATTTTCAGTGAGCAAATGTTGGTTTACTACATCAATATTTTCCGGGATGCTT  1384
                                                                                      
Sbjct 2986  --------------------------------------------------------------------------  2985

Query 1385  TTTGGCCAAATGGGAAGTTGGCACCACCGACCACAATCAGAAGCAAAGAGCAAAGTCAGGAAACAAAACAGAGA  1458
                                                                                      
Sbjct 2986  --------------------------------------------------------------------------  2985

Query 1459  GCACAGCAAAAGCTGCTTGAAAACATTCCAGATATGCTTCAGAGCCTTGTTGGACAGCAAAATGCCCGCCACGG  1532
                                                                                      
Sbjct 2986  --------------------------------------------------------------------------  2985

Query 1533  TATAATAAAAATATTCAATGCACTGCAAGAAACAAGAGCCAACAAGCATCTGTTATATGCGCTGATGGAACTGC  1606
                                                                                      
Sbjct 2986  --------------------------------------------------------------------------  2985

Query 1607  TGCTAATTGAACTGTGTCCTGAGCTGAGAGTTCATTTAGATCAACTTAAAGCTGGCCAAGTT  1668
                                                                          
Sbjct 2986  --------------------------------------------------------------  2985

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