Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14358
- Subject:
- NM_172591.3
- Aligned Length:
- 2458
- Identities:
- 979
- Gaps:
- 1361
Alignment
Query 1 ------ATGGCGTATTTCATCGAGAATTTTTGGGGGGAAAAAAATAGTGGCTTTGATGTCCTCTACCATAATAT 68
||||||.|||||.|.||||||||.||||||||||||||||.||||||||||||.||.|||||||||||
Sbjct 1 ATGGTCATGGCGCATTTCGTGGAGAATTTCTGGGGGGAAAAAAATAATGGCTTTGATGTACTGTACCATAATAT 74
Query 69 GAAACATGGACAGATATCGACAAAAGAACTAGCAGATTTTGTAAGGGAACGAGCTACCATAGAGGAGGCATACT 142
|||.||||||||||||||.||.|||||||||||||||||||||||.|||.|||||||.|||||.||||||||||
Sbjct 75 GAAGCATGGACAGATATCAACTAAAGAACTAGCAGATTTTGTAAGAGAAAGAGCTACAATAGAAGAGGCATACT 148
Query 143 CCAGGTCAATGACAAAACTAGCAAAATCTGCAAGCAATTATTCACAACTTGGAACATTTGCACCAGTATGGGAT 216
||||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||.|.||||||
Sbjct 149 CCAGATCAATGACAAAACTAGCGAAATCTGCAAGCAATTATTCACAACTTGGAACATTTGCACCAATGTGGGAT 222
Query 217 GTATTCAAAACATCTACAGAGAAATTAGCAAATTGTCACTTGGATCTTGTTAGAAAATTACAAGAATTAATAAA 290
||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.|||||||||||
Sbjct 223 GTATTCAAAACATCTACAGAGAAATTAGCAAATTGTCATTTGGATCTTGTTAGAAAATTACAGGAATTAATAAA 296
Query 291 GGAAGTTCAGAAGTATGGAGAAGAACAAGTAAAGTCTCATAAAAAGACTAAAGAAGAAGTTGCAGGAACTCTGG 364
|||||||||||||||||||||.||.|||||.|||||||||||.|||||||||||||||||.|||||.|||||||
Sbjct 297 GGAAGTTCAGAAGTATGGAGAGGAGCAAGTCAAGTCTCATAAGAAGACTAAAGAAGAAGTCGCAGGGACTCTGG 370
Query 365 AAGCTGTCCAAACCATTCAGAGCATAACTCAGGCCCTCCAGAAATCCAAGGAAAATTACAATGCCAAGTGTGTA 438
||||.||||||.|||||||||..|||||||||||.||||||||.||.|||||||||||||.||||||.||||||
Sbjct 371 AAGCAGTCCAAGCCATTCAGAATATAACTCAGGCACTCCAGAAGTCGAAGGAAAATTACACTGCCAAATGTGTA 444
Query 439 GAACAGGAGCGTTTGAAAAAGGAAGGAGCTACACAAAGAGAAATAGAAAAGGCAGCTGTTAAATCTAAGAAAGC 512
||||||||.|||.|||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 445 GAACAGGAACGTCTGAAAAAGGAAGGAGCTACACAAAGAGAAATAGAAAAGGCAGCTGTTAAGTCTAAGAAAGC 518
Query 513 TACAGATACTTATAAACTCTATGTGGAAAAATATGCATTAGCAAAAGCTGATTTCGAACAGAAAATGACAGAAA 586
||||||||||||||||||.|||||||||||.|||||||||.|||||||.|||||.||.|||||.||||||||||
Sbjct 519 TACAGATACTTATAAACTTTATGTGGAAAAGTATGCATTAACAAAAGCAGATTTTGAGCAGAAGATGACAGAAA 592
Query 587 CAGCTCAGAAATTTCAAGATATTGAAGAAACTCATCTCATTCACATAAAGGAAATTATAGGATCCTTGTCAAAT 660
||||.|||||||||||||||||||||||||||||.|||||||||||||||||||||||.|||||||||||||||
Sbjct 593 CAGCCCAGAAATTTCAAGATATTGAAGAAACTCACCTCATTCACATAAAGGAAATTATCGGATCCTTGTCAAAT 666
Query 661 GCTATAAAGGAAATTCATTTGCAGATAGGCCAGGTCCATGAAGAATTTATAAATAACATGGCTAATACTACAGT 734
|||.|.|||||.||.||.||.|||||.||||||||.||||||||.|||||||||||||||||||||||||||.|
Sbjct 667 GCTGTCAAGGAGATCCACTTACAGATCGGCCAGGTTCATGAAGAGTTTATAAATAACATGGCTAATACTACAAT 740
Query 735 TGAAAGTTTGATACAAAAATTTGCTGAGTCAAAAGGCACTGGGAAGGAAAGACCTGGCCTCATTGAATTTGAAG 808
||||||||||||.||.||||||||.||||||||||||||.|||||||||||||||||.||.|||||||||||||
Sbjct 741 TGAAAGTTTGATTCAGAAATTTGCCGAGTCAAAAGGCACAGGGAAGGAAAGACCTGGTCTTATTGAATTTGAAG 814
Query 809 AATGTGACACTGCTAGTGCAGTTGAAGGTATAAAACCAAGGAAAAGAAAGACCTTTGCTTTGCCAGGAATCATT 882
|.||||||.|||||||||||||||||||.|||||||||||||||||||||||.|||||||||||.|||||.|||
Sbjct 815 AGTGTGACCCTGCTAGTGCAGTTGAAGGCATAAAACCAAGGAAAAGAAAGACTTTTGCTTTGCCTGGAATAATT 888
Query 883 AAAAAGGAAAAAGATGCAGAATCTGTATGGAGTTTCACTGTTGTTGCCCAGGTTGG------AATGCAATGGCG 950
|||||||||||.||.|||||||||| ||||.|.|| |||.|| |||.||.| |.|.||
Sbjct 889 AAAAAGGAAAAGGACGCAGAATCTG--TGGAATGTC-CTGATG-----CAGATTCGCTTAATATTCCA------ 948
Query 951 CGATCTTG--------GCTTACTGCATTCTCCACC------------------TCCCAGGTTCAAGCGA----- 993
|||.|.| |.||.|.|.|| |..||| |.||| |||.||
Sbjct 949 -GATGTAGATGAAGAAGGTTTCAGTAT--TAAACCAGAAGCAAATCAGAATGATACCA-----AAGAGAACCAT 1014
Query 994 TTCTCCTCCTAC-----CTCAGCCTC-------------CCAA----GTAGCTGGA-----ATTA---CGGCGC 1037
||||.|||.|.| |||.|.||| |||| ||| |.||| ||.| |.||||
Sbjct 1015 TTCTACTCATCCAGTGACTCTGACTCTGAAGATGAAGAACCAAAGAGGTA-CCGGATAGAGATCAAGCCCGCGC 1087
Query 1038 --CCA--------CCACCACATC--TGGCTAATTTTTTGTAT----TTTTAGTAGAGACAGGG----------T 1085
||| .||.|||| | |||| ||.||||.|| |...||||...|.|||| |
Sbjct 1088 ATCCAAATAACTTGCATCACA-CAATGGC---TTCTTTGGATGAACTGAAAGTATCCATAGGGAATATAACATT 1157
Query 1086 TTCACCA----TAT--------TGGCCAG-GCTG----GTCGCGAACTCCTGACCTCAGG-------------- 1128
.||.||| ||| .|.|||| ||.| .||| |||.|| |.||.|.|
Sbjct 1158 GTCCCCAGCAGTATCTAGACACAGTCCAGTGCAGATGAATCG-GAATTC---ATCTAATGAAGAATTAACAAAA 1227
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1228 TCAAAGCCGTCTTCTCTACCCACTGAGAAAGGGACCAATGATTTACTTGCTTGGGATCCCCTGTTCGGATCGTC 1301
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1302 GCTTGAGTCATCTTCAGCTCCACTAACTTCGTCATCATCGGCCAGACCCACGACACCTCTCTCTTTAGGCACCC 1375
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1376 TTGTTCCACCTCCAAGGCCTGCTTCCAGACCAAAGCTTGCTTCAGGAAAACTGAGTGGGATCAATGAAATACCC 1449
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1450 AGGCCATTCAGCCCACCTGTAACTTCCAACACCAGCCCACCTCCTACTGCTCCCTTAGCCCGAGCCGAGAGCAG 1523
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1524 CTCCTCTATCTCCTCGTCTGCCTCGTTGAGTGCTGCCAACACTCCAACAGTAGGTGTATCACGGGGTCCCAGCC 1597
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1598 CGGTCAGCCTTGGAAACCAGGACACTTTACCTGTGGCAATCGCCCTTACAGAATCTGTCAACGCCTACTTTAAA 1671
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1672 GGAGCAGATCCTACCAAGTGTATTGTGAAGATCACGGGAGACGTGACAATATCATTTCCCAGTGGGATTATTAA 1745
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1746 AGTCTTCACCAGCAACCCCTCCCCAGCTGTGCTGTGCTTTAGGGTGAAGAACATCAGCAGGCTGGAGCAGATCC 1819
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1820 TTCCAAACTCCCAGCTTGTGTTCAGTGATCCATCACAGTGTGATTCCAACACAAAAGATTTTTGGATGAACATG 1893
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1894 CAAGCTGTTACTATCTACCTCAAGAAGCTATCAGAACAAAATCCAGCTGCTTCTTATTATAATGTAGATGTATT 1967
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1968 AAAATACCAGGTATCATCAAATGGCATTCAGTCCACTCCTCTAAATCTTGCAACCTACTGGAAATGTAGTGCCA 2041
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2042 GCACCACAGATCTGAGAGTGGATTATAAGTACAACCCAGAAGCTATGGTCGCTCCGAGTGTGCTTTCCAACATA 2115
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2116 CAGGTGGTGGTTCCCGTGGATGGAGGTGTCACAAATATGCAGTCCCTTCCTCCTGCAATATGGAATGCAGAGCA 2189
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2190 AATGAAAGCTTTTTGGAAATTATCTGGGATTTCGGAGAAATCAGACAGTGGAGGTTCTGGATCCCTCAGAGCAA 2263
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2264 AATTTGATCTTTCAGAAGGACCCAGCAAACCTACAACACTGGCAGTGCAATTCCTCAGTGAGGGCAATACGCTC 2337
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2338 TCAGGAGTGGATATTGAGCTTGTGGGTACTGGCTATAGACTTTCCTTAGTAAAGAAGCGCTTTGCCACTGGACG 2411
Query 1129 ---------------- 1128
Sbjct 2412 ATACTTGGCAGATTGT 2427
