Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_14413
• Subject: XM_006538321.3
• Aligned Length: 1077
• Identities: 690
• Gaps: 292

Alignment

Query    1  ATGGGACCAGTCTCTCTTC----TTCCAAAATATCAGAAGTTAAACACTT-GGAACGGAGATTTGGCCAAGATG  69
            ||||           ||.|    ||        ||||        ||||| ||..||      |||.| ||.| 
Sbjct    1  ATGG-----------CTGCGGCGTT--------TCAG--------CACTTCGGCGCG------TGGAC-AGCT-  39

Query   70  ACCCATTTACAGGCTGGACTCAGTCCAGAGACTATAGAGAAAGCTCGCCTGGAACTGAATGAAAACCCCGATGT  143
             |||||       |||    ||.|||   .|||         ||.|.||              |.|||      
Sbjct   40  -CCCAT-------CTG----CAATCC---CACT---------GCACTCC--------------ATCCC------  69

Query  144  TTTACATCAGGATATTCAGCAAGTCAGGGACATGATCATCACCAGGCCTGACATTGGATTTTTACGTACAGATG  217
                          |||.|||...||        .||.|||||  ||||                         
Sbjct   70  --------------TTCTGCACCCCA--------CTCTTCACC--GCCT-------------------------  94

Query  218  ATGC-CTTCATCCTGAGATTTCT--CCGAGCCAGGAAGTTTCACCAAGCGGATGCCTTTAGACTCCTG-GCT--  285
            .||| .|.|||||       |||  ||..||||        |||  ||                |||| |||  
Sbjct   95  CTGCGGTCCATCC-------TCTTGCCACGCCA--------CAC--AG----------------CCTGCGCTCC  135

Query  286  -CAG-TATTTCCAGTACCGCCAGCTAAACCTGGACATGTTCAAAAACTTCAAGGCAGATGATC-CCGGCATTAA  356
             ||| .||   |||.||| |||.||..|||                              ||| |||.|||.| 
Sbjct  136  CCAGCCAT---CAGCACC-CCATCTCCACC------------------------------ATCGCCGTCATCA-  174

Query  357  GAGGGCTCTGATCGATGGGTTCCCCGGGGTGCTGGAAAACCGAGACCATTA-CGGCAGGAAGATTCTTTTGCTG  429
                                ||.||                   ||||..| ||||              ||  
Sbjct  175  --------------------TCTCC-------------------ACCAGCACCGGC--------------GC--  193

Query  430  TTTGCAGCCAATTGGGATCAGAGTAGGAACTCCTTCACAGACATCCTTCGTGCCATCCTGCTGTCATTGGAAGT  503
                                     |||||||||||||.||||||||.||||||||.||.|||||.||||||||
Sbjct  194  -------------------------GGAACTCCTTCACGGACATCCTCCGTGCCATTCTCCTGTCCTTGGAAGT  242

Query  504  CCTAATCGAAGATCCGGAGCTTCAGATAAATGGCTTCATTTTAATTATAGACTGGAGTAATTTTTCCTTCAAAC  577
            |||.||.||||||||.|||||.||||||||.||.|||||||||||||||||||||||.||.|||||||||||.|
Sbjct  243  CCTTATTGAAGATCCCGAGCTCCAGATAAACGGTTTCATTTTAATTATAGACTGGAGCAACTTTTCCTTCAAGC  316

Query  578  AAGCCTCCAAACTGACACCTTCAATCCTTAAACTGGCCATTGAAGGGTTGCAGGACAGCTTTCCTGCCCGCTTT  651
            ||||.|||||.||||||||.||.|||||.||||||||||||||||||.|||||||||||||||||||.||||||
Sbjct  317  AAGCATCCAAGCTGACACCCTCTATCCTGAAACTGGCCATTGAAGGGCTGCAGGACAGCTTTCCTGCTCGCTTT  390

Query  652  GGAGGAGTCCACTTTGTCAACCAGCCCTGGTACATTCATGCCCTCTACACACTCATCAAGCCATTTCTTAAAGA  725
            |||||.|||||.|||||||||||||||||||||||.||.|||||.||||||||||||||||||||.|||||.||
Sbjct  391  GGAGGCGTCCATTTTGTCAACCAGCCCTGGTACATCCACGCCCTGTACACACTCATCAAGCCATTCCTTAAGGA  464

Query  726  CAAGACCAGGAAACGGATTTTCCTGCATGGAAACAATTTAAACAGCCTTCACCAGCTAATACACCCTGAATTTT  799
            ||||||.||.||||||||||||||.||||||||||||||||||||.||||||||||||||||||||.||.||..
Sbjct  465  CAAGACAAGAAAACGGATTTTCCTACATGGAAACAATTTAAACAGTCTTCACCAGCTAATACACCCCGAGTTCC  538

Query  800  TGCCCTCTGAATTTGGAGGAACTCTTCCTCCTTATGACATGGGAACTTGGGCCCGGACGTTACTCGGTCCCGAC  873
            ||||||||||||||||||||||.|||||||||||.||||||||.||||||||||||||.|||||.||.||.|||
Sbjct  539  TGCCCTCTGAATTTGGAGGAACCCTTCCTCCTTACGACATGGGGACTTGGGCCCGGACATTACTTGGCCCTGAC  612

Query  874  TACAGCGATGAAAATGACTATACTCACACATCCTATAATGCAATGCACGTGAAGCATACGTCCTCGAATCTGGA  947
            |||||||||||||||||||||||.||.||.|||||.|||||.|||||.|||||.||.||.|..||.||.|||||
Sbjct  613  TACAGCGATGAAAATGACTATACCCATACTTCCTACAATGCCATGCATGTGAAACACACCTGTTCCAACCTGGA  686

Query  948  GAGAGAATGCTCACCCAAGCTGATGAAAAGATCTCAGTCTGTGGTAGAAGCTGGGACCCTGAAACATGAGGAGA  1021
            ||||||.|||||||||||||..||||||||||||||||||||||||||||||||||||.||||||||||.||||
Sbjct  687  GAGAGAGTGCTCACCCAAGCCCATGAAAAGATCTCAGTCTGTGGTAGAAGCTGGGACCTTGAAACATGAAGAGA  760

Query 1022  AGGGAGAGAATGAGAACACCCAGCCACTCCTGG-TCTGGAC  1061
            |.|||||.||||||||||||||||||||.|||| |||||||
Sbjct  761  AAGGAGAAAATGAGAACACCCAGCCACTGCTGGCTCTGGAC  801