Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_14460
• Subject: XM_017024470.2
• Aligned Length: 3324
• Identities: 1991
• Gaps: 1329

Alignment

Query    1  ATGCTGCCACTGGGCTCAGAGCCCGCCCTGAATGAGCTGCTGCTTCGCAAGGAGGAGGAGTGGAGGGCGCTGCA  74
                                           |||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  -------------------------------ATGAGCTGCTGCTTCGCAAGGAGGAGGAGTGGAGGGCGCTGCA  43

Query   75  GGCACACCGCACCCAGCTGCAGGAGGCGGCTCTGCAGGACACACGGAGCCAGCTGGAGGAGGCGCAGGGGAAAC  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   44  GGCACACCGCACCCAGCTGCAGGAGGCGGCTCTGCAGGACACACGGAGCCAGCTGGAGGAGGCGCAGGGGAAAC  117

Query  149  TGCGGTGCCTGCAGGAGGACTTTGTCTACAACCTTCAGGTGCTGGAGGAGCGGGACCTCGAGCTGGAGCGCTAT  222
            |||||||||||||||||||||||||||||||||||                                       
Sbjct  118  TGCGGTGCCTGCAGGAGGACTTTGTCTACAACCTT---------------------------------------  152

Query  223  GACGCCGCCTTCGCCCAGGCCAGGGAGTGGGAGGAGGCCAGGCGGGCAGAGGTGAGCGAGCTCAAGATAGAGGC  296
                                                                                      
Sbjct  153  --------------------------------------------------------------------------  152

Query  297  AGCTAAGCTGAGGCAGGCGCTAGCCAGAGAGGCCAGGAAGGTGGAGGAGCTGCAGCAGCAGCAGCAGCTGGCAT  370
                                                                                      
Sbjct  153  --------------------------------------------------------------------------  152

Query  371  TCCAGGAGCATCGCCTGGAGCTGGAGCGCGTCCACAGTGACAAGAATGGTGAGATTGACCACCACCGGGAACAG  444
                                              ||||||||||||||||||||||||||||||||||||||||
Sbjct  153  ----------------------------------CAGTGACAAGAATGGTGAGATTGACCACCACCGGGAACAG  192

Query  445  TATGAAAATCTAAAATGGACACTGGAGAGAAAACTTGAGGAGCTCGACGGTGAGCTTGCTCTGCAGAGACAGGA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  193  TATGAAAATCTAAAATGGACACTGGAGAGAAAACTTGAGGAGCTCGACGGTGAGCTTGCTCTGCAGAGACAGGA  266

Query  519  ACTGCTGCTGGAGTTTGAATCGAAAATGCGGAAGAGGGAGCACGAATTCCGTCTGCAGGCTGACAACATGAGCA  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  267  ACTGCTGCTGGAGTTTGAATCGAAAATGCGGAAGAGGGAGCACGAATTCCGTCTGCAGGCTGACAACATGAGCA  340

Query  593  ACACAGCCTTGTCCCGGGAGCTTAAGGTTAAACTACTGCACAAAGAGCTGGAGGCTCTGAAGGAAGCCGGGGCA  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  341  ACACAGCCTTGTCCCGGGAGCTTAAGGTTAAACTACTGCACAAAGAGCTGGAGGCTCTGAAGGAAGCCGGGGCA  414

Query  667  AAGGCTGCAGAGAGTCTGCAGAGGGCAGAGGCCACCAACGCCGAGCTGGAGAGGAAGCTCCAGAGCCGAGCCGG  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  415  AAGGCTGCAGAGAGTCTGCAGAGGGCAGAGGCCACCAACGCCGAGCTGGAGAGGAAGCTCCAGAGCCGAGCCGG  488

Query  741  GGAGCTCCAGGATCTGGAGGCCATGAGCCGCGCCCGGGTAAAGGATTTAGAGGATAAACTTCACTCTGTGCAGC  814
            ||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  489  GGAGCTCCAGGACCTGGAGGCCATGAGCCGCGCCCGGGTAAAGGATTTAGAGGATAAACTTCACTCTGTGCAGC  562

Query  815  TAACCAGGAAGAAGGAAGAGGAAACATTTAAGAGGAAGCATGAGGAGCTCGACCGTCTGGCCAGGGAGAAGGAT  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  563  TAACCAGGAAGAAGGAAGAGGAAACATTTAAGAGGAAGCATGAGGAGCTCGACCGTCTGGCCAGGGAGAAGGAT  636

Query  889  GCAGTGCTGGTGGCGGTGAAGGGAGCCCACGTGGAGCAGCTGCAGGAGCTGCAGACCAGGGTTCTGGAGCTGCA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  637  GCAGTGCTGGTGGCGGTGAAGGGAGCCCACGTGGAGCAGCTGCAGGAGCTGCAGACCAGGGTTCTGGAGCTGCA  710

Query  963  GGCCCACTGCGAGACCCTCGAGGCGCAGCTCCGCAGGGCAGAGTGGAGACAGGCTGACACCGCCAAGGAGAAGG  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  711  GGCCCACTGCGAGACCCTCGAGGCGCAGCTCCGCAGGGCAGAGTGGAGACAGGCTGACACCGCCAAGGAGAAGG  784

Query 1037  ACGCTGCCATTGACCAACTTCGTGAAGATGCATCAACTGTAAAATCTGCCTGGGATGCTCAAATTGCTCAACTA  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  785  ACGCTGCCATTGACCAACTTCGTGAAGATGCATCAACTGTAAAATCTGCCTGGGATGCTCAAATTGCTCAACTA  858

Query 1111  TCTAAGGAGATGGTCTCCAGAGACCTTCAGATTCAGACGCTGCAGGAAGAAGAGGTGAAGCTCAAGGCACAGGT  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  859  TCTAAGGAGATGGTCTCCAGAGACCTTCAGATTCAGACGCTGCAGGAAGAAGAGGTGAAGCTCAAGGCACAGGT  932

Query 1185  GGCCCGATCCCAGCAGGACATTGAAAGGTACAAGCAACAGCTGTCCCTGGCAGTGGAAAGGGAGCGGAGCCTGG  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  933  GGCCCGATCCCAGCAGGACATTGAAAGGTACAAGCAACAGCTGTCCCTGGCAGTGGAAAGGGAGCGGAGCCTGG  1006

Query 1259  AGCGTGATCAGGTGCAGCTGGGCCTGGACTGGCAGCGCCGCTGTGATGACATTGAAAGGGACCAGATCCAAAAG  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007  AGCGTGATCAGGTGCAGCTGGGCCTGGACTGGCAGCGCCGCTGTGATGACATTGAAAGGGACCAGATCCAAAAG  1080

Query 1333  TCAGAGGCCCTGATTCAGGGTCTGAGCATGGCAAAAAGTCAGGTTGCTGCCAAGCTGCAGGAGACAGAGCAGGC  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081  TCAGAGGCCCTGATTCAGGGTCTGAGCATGGCAAAAAGTCAGGTTGCTGCCAAGCTGCAGGAGACAGAGCAGGC  1154

Query 1407  GCTACAGGAGCAGGAGGTGGTGCTGAAGGCCATGACCCTGGAACGAGACCAGGCCGTGCAGGCCCTGAGGATGC  1480
            |||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155  GCTACAGGAGCAGGAGGTGGTGCTGAAGGCCGTGACCCTGGAACGAGACCAGGCCGTGCAGGCCCTGAGGATGC  1228

Query 1481  ATGGGCTCCCCAGACCAGGGGCACAGATGCTTCTCAGGCAGCATGAAGAAGAAATAAGTAAAGACTTTCCATCC  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229  ATGGGCTCCCCAGACCAGGGGCACAGATGCTTCTCAGGCAGCATGAAGAAGAAATAAGTAAAGACTTTCCATCC  1302

Query 1555  AGTGAGATCCAGCGGCTCCGAGAGCAGAACACGAGCTTGCGAAACGCGATTGCCCAGATGAGGAAAGAAATGGA  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303  AGTGAGATCCAGCGGCTCCGAGAGCAGAACACGAGCTTGCGAAACGCGATTGCCCAGATGAGGAAAGAAATGGA  1376

Query 1629  GGCTCTAAGCCATCAGATTCCTCCTCCCATCCAGACAGCGGCAGAGAGCACAGATGCAAACCAGCCTGACCCAG  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377  GGCTCTAAGCCATCAGATTCCTCCTCCCATCCAGACAGCGGCAGAGAGCACAGATGCAAACCAGCCTGACCCAG  1450

Query 1703  AGGCTGGGGGAGATGCCGCCACTCCTGATTATGTTCTGGCCCTTGAAGCAGAAATACGAACTCTAAAGCATAAG  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451  AGGCTGGGGGAGATGCCGCCACTCCTGATTATGTTCTGGCCCTTGAAGCAGAAATACGAACTCTAAAGCATAAG  1524

Query 1777  TTTAAAACTCTGGAAAAGCATCTAGAAGATGTGTTGGATCCTTTAAAGATGTCCTCACCTCATGCTGAGTCTCA  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525  TTTAAAACTCTGGAAAAGCATCTAGAAGATGTGTTGGATCCTTTAAAGATGTCCTCACCTCATGCTGAGTCTCA  1598

Query 1851  GCCCAGCGTCCGCACCTCGACAGAGACGACTGGAGGGTCTGCCCAAGCTGGTCAAGCCGGAGGGTCTGTCCAAG  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599  GCCCAGCGTCCGCACCTCGACAGAGACGACTGGAGGGTCTGCCCAAGCTGGTCAAGCCGGAGGGTCTGTCCAAG  1672

Query 1925  CTGGTCAAGCAGGAGGATCTGTCCAAGCTGGCCCAGTATCCTCTGGACTGGCACTCAGGAAGCTCGGGGACAGA  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673  CTGGTCAAGCAGGAGGATCTGTCCAAGCTGGCCCAGTATCCTCTGGACTGGCACTCAGGAAGCTCGGGGACAGA  1746

Query 1999  GTGCAGCTCCTAAACCTGCTGGTGACACGACTCAGACAGAAGGTGCTGCGGGAACCCCTGGAGCCGGCCGCTCT  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1747  GTGCAGCTCCTAAACCTGCTGGTGACACGACTCAGACAGAAGGTGCTGCGGGAACCCCTGGAGCCGGCCGCTCT  1820

Query 2073  CCAGCGTGAGCTTCCCCGTGAGGTGGACCAGGTACACCTGGAGGTTTTGGAGCTGCGGAAGCAGGTGGCTGAGC  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1821  CCAGCGTGAGCTTCCCCGTGAGGTGGACCAGGTACACCTGGAGGTTTTGGAGCTGCGGAAGCAGGTGGCTGAGC  1894

Query 2147  TGGGGAAGCATCTCAGGATAGCCCAGCACGGGGGAGCGGAGCCTTCAGGCAGGAAGCAGCCCCCAGCCTCGGAC  2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1895  TGGGGAAGCATCTCAGGATAGCCCAGCACGGGGGAGCGGAGCCTTCAGGCAGGAAGCAGCCCCCAGCCTCGGAC  1968

Query 2221  GCCGTGGCCCTTGGGAGAGAGGTGGGTGNCCGC-----------------------------------------  2253
            |||||||||||||||||||||      |.||.|                                         
Sbjct 1969  GCCGTGGCCCTTGGGAGAGAG------GGCCTCACCAAGAGAGGGCCTATGGAGGCCGAGGACCAGGGGGAGCT  2036

Query 2254  --------------------------------------------------------------------------  2253
                                                                                      
Sbjct 2037  TTTCCTGCACCTCCGGTCAGTGGCACGTGCCCCCCAGACCTTATCTATGCACCGACTCCAGAGAAAGCTGAAGG  2110

Query 2254  --------------------------------------------------------------------------  2253
                                                                                      
Sbjct 2111  AGGCAGCCAGAAAAATCATCAGCCTCCGCCTGGAGAAAGAGCAGCTCATCGAGATGGGGAACAGGCTCCGTGCA  2184

Query 2254  --------------------------------------------------------------------------  2253
                                                                                      
Sbjct 2185  GAGCTGGGCCGACCCGAAAGGTGGCTGTTGCACCACGCCCTCCCTCCTGCCCCTGAGGCCCGGAAGCCAGGCGA  2258

Query 2254  --------------------------------------------------------------------------  2253
                                                                                      
Sbjct 2259  GGAGCCCAGGAGGCCTTTGGATCGCAGCCCACCTTTGGGACAGGTGCAGCCCCATTTTACATCTCAGGACGCCA  2332

Query 2254  --------------------------------------------------------------------------  2253
                                                                                      
Sbjct 2333  AGAGTGCCGAGGATGAGGCTCCTTCCAGACACTTGGGAAAGCACCAGCCCCGCTCAGCACAGGTGGGCAGCAGA  2406

Query 2254  --------------------------------------------------------------------------  2253
                                                                                      
Sbjct 2407  CTTGACGCCCTGCAAGGCCCGAAGACACAACACAGCATCCACACGGTGACCTGTAAATCACCTCGGCAGAAAGA  2480

Query 2254  --------------------------------------------------------------------------  2253
                                                                                      
Sbjct 2481  AGACAGGTCCCCAAAGCCACCCCAGGCTCCCCAGCACCCTGAGGAGCATGGTCGCCAATCCCACAGCTCCTCCT  2554

Query 2254  --------------------------------------------------------------------------  2253
                                                                                      
Sbjct 2555  CCTTTGCCAGTGGCACCCTCCAGGACATGTGGAGGTTGCTAGACCTGGGATCCAGCCCTTCTGGTGTCACCTCC  2628

Query 2254  --------------------------------------------------------------------------  2253
                                                                                      
Sbjct 2629  CAGGGTGACTCAACTCCAGAAATGGGGTCTCACTATGTCACCCAGGCTGGTCTCGAACTCCTGGGCTCAAGCAG  2702

Query 2254  --------------------------------------------------------------------------  2253
                                                                                      
Sbjct 2703  TCCTGCCGCCTTGGCCTCCCAAAGTGCTGAGATGACAGGTGTGGGCCCCACGCCCAGCCTGGCGTGGAGTGGAG  2776

Query 2254  --------------------------------------------------------------------------  2253
                                                                                      
Sbjct 2777  CCCTTCACCCAAACATGAACCAGGAGGCGAGCTTGGTAAGGAGCACGTGGGCTCCAGGAATGCGAGGGGGAATG  2850

Query 2254  --------------------------------------------------------------------------  2253
                                                                                      
Sbjct 2851  AATGGAGGCAGCTCCTCAGTGTGCAAAAACATGCAGCGCGGGCCTCACTGGTCACCATCACAGCAGCCTTGCAG  2924

Query 2254  --------------------------------------------------------------------------  2253
                                                                                      
Sbjct 2925  TGGGATCAGGACAGTCCTGCTGTCCAGGAAGGAGAGGACCCTGCTCTCTTGTTTCTCACTACCTGCTCCTGTCG  2998

Query 2254  --------------------------------------------------------------------  2253
                                                                                
Sbjct 2999  TTCTAGTCCCATTGCTGCTCTCAGGACAAGCTGTGACTGAGAGAGCAGGTCACGCTGGTGACATTTTA  3066