Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14462
- Subject:
- NM_027116.1
- Aligned Length:
- 2550
- Identities:
- 1532
- Gaps:
- 796
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCAGAAGAACTACAATGTGCACTTCACCAAGAACGCCCGGACCCCCAATGAACGATACCTTTTGGATCCCGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTTGGGGCACCAAAAAGGATGCTGCCGTCAGTGGTACCAGGACCCGGTGGCCACTCACACCCATGGGCCCTATC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCTGTCCCCCCAGGCTCACTGGCAGCAGACCTACCATAGCCACCGAGGTGGCAGCGGCTGTCGCCGGTGTCCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAGCCCCTCATTCCGCAGCGACAGCGGCGGCAGCAGCAGCAGCGACAACCCCCACCCCTACCTCCCAGCCCTCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCGGCAGCGGCTCGGTCCAGTTCGCGGGGCCCAGAAGGGGTCACCCGCGATCGCCGCTGCCCGCATGGAACCAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCAGCGCCCCCAAGCCTGTCACCTCCACACCCACCGCAGTATCAGCCACGGCCAGCAGCGGCCCAGCCCTACCC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCTGCAGCCGGCGCCCTCCTGGAGCCCAGCGAGCCCACCGAGGCGCGGCCACTGCCTGCACCGGCAGCCTGCGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTCCTTCACCTCCTACGGCGCCGACATCCTGACAGAGGATGATGTCTACTGCAGCTGTCTGGCTAAAACTCTGT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GTCACGTGCCCGTCCCTGTGACGGTGGGTTTCTACGCTCCCTTCGGCTGCCGTCTTCACTTGATGTTGGATAAA 666
Query 1 ------------ATGCAGCAGGAGGCCGCGCAGCGCGAGAGCGAGGAGCTGCAGCACGTGCAGTGGCGGCCGCG 62
|||||||||||||||||||||||.|||||||||||||||||||.|||||||||||.|||.||
Sbjct 667 ATCATGACGCTGATGCAGCAGGAGGCCGCGCAGCGTGAGAGCGAGGAGCTGCAGCGCGTGCAGTGGCAGCCACG 740
Query 63 TGCCGTGAGCGGCTGGGGCGTCCCGCAGCTACTGTGGTACCTGGTGTTCCTGCAGCCCATCATCACCGAGGTGC 136
|..||||.|||||||||||||||||.||||.|||||||.|||||||||.|||||||||.|.|||||.|||.|||
Sbjct 741 TCGCGTGCGCGGCTGGGGCGTCCCGAAGCTGCTGTGGTTCCTGGTGTTTCTGCAGCCCGTGATCACGGAGCTGC 814
Query 137 ACCTGCGGCGCAGGAACGTGCAGTTCCTTTTCATCCGCTTTAGCGCCTGGCAGTACGCGGGCACCGACAAGCTG 210
||||||||||||||||.||||..|||||.|||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 815 ACCTGCGGCGCAGGAATGTGCGCTTCCTGTTCATCCGCTTCAGCGCCTGGCAGTACGCGGGCACCGACAAGCTG 888
Query 211 TGGGCCGGCCTGGTGACCACGTTGTGCGAGGGCATCCGCCGCCACTATGGCGCACTGCCCTTCAGCGTGTACTC 284
||||||||.||||||||||||.||||.|||||||||||||.||||||.|||||.||||||||.|||||||||||
Sbjct 889 TGGGCCGGGCTGGTGACCACGCTGTGTGAGGGCATCCGCCACCACTACGGCGCGCTGCCCTTTAGCGTGTACTC 962
Query 285 GGTGCTGGGCAACAAGCC----GGCCACCAGGCAGGACTGCTGCCAGAGCGAGTGGCATTGTCGGCGCCGCGTG 354
||||||.||||||||||| ||||..|..|..||.|| ||||||..||||||||||.||.||.||.||||||
Sbjct 963 GGTGCTAGGCAACAAGCCCTGTGGCCCGCGTGATGGCCT-CTGCCAACGCGAGTGGCACTGCCGACGTCGCGTG 1035
Query 355 TGCCTGGGGCTGCTGGCGCTGCTGGCGGCGCTGGGCCTGGGTGTGGGGCTGCTCTACTTGTCACTGGGCGGCCA 428
|||||||.||||||||||||||||||.||||||.|||||||||||||||||||.|||.||||.|||||.|||||
Sbjct 1036 TGCCTGGCGCTGCTGGCGCTGCTGGCCGCGCTGTGCCTGGGTGTGGGGCTGCTGTACCTGTCGCTGGGAGGCCA 1109
Query 429 CGCGCTGGGCCACGGCAGCCCGAGCG-GCAGCCTGCTCAAGGTGTTTGGCGGCGCGGCCACCACACTGTCGGGC 501
|||||.||||||||| .||||| | |..|||||||.|.|.|.|||||||||||||||||.||.||.|||
Sbjct 1110 CGCGCCGGGCCACGG-----AGAGCGTG--GTGTGCTCAAAGCGCTGGGCGGCGCGGCCACCACGCTATCCGGC 1176
Query 502 TCGGGGCTGCTCATGGCCGTGTACTCGGTGGGCAAGCACCTGTTCGTAAGCCAGCGCAAGAAGATCGAGCGGCT 575
||.|||||||||||||||||||||||.|||||||||||.||||||||.|||||||||||||||||||||||.||
Sbjct 1177 TCAGGGCTGCTCATGGCCGTGTACTCCGTGGGCAAGCATCTGTTCGTGAGCCAGCGCAAGAAGATCGAGCGCCT 1250
Query 576 GGTGTCGCGTGAAAAGTTCGGCAGCCAGCTGGGTTTCATGTGCGAGGTGAAGAAGGAGGTGGAGCTGCTCACCG 649
||||||||||||.|||||.|||||||||.||||.|||||||||||||||||||||||||||||.||||||||.|
Sbjct 1251 GGTGTCGCGTGAGAAGTTTGGCAGCCAGTTGGGCTTCATGTGCGAGGTGAAGAAGGAGGTGGAACTGCTCACGG 1324
Query 650 ACTTCCTGTGCTTCCTGGAGATCTACCAGCGGCGCAGGCTGCGCGTGGTGCTGGAGGTCACCGGGCTGGACACG 723
|.|||||||||||||||||||||||||||||.|||.|||||||.|||||.||.||||||||.|||.||||||||
Sbjct 1325 ATTTCCTGTGCTTCCTGGAGATCTACCAGCGACGCCGGCTGCGTGTGGTCCTCGAGGTCACTGGGTTGGACACG 1398
Query 724 TGCTACCCGGAGCGCGTGGTGGGCGTGCTCAACGCCATCAACACGCTGCTGTCCGACAGCCACGCGCCCTTCAT 797
||||||||.|||||||||||||||||.||.||||||||||||||.||||||||||||||||||||.||||||||
Sbjct 1399 TGCTACCCAGAGCGCGTGGTGGGCGTCCTAAACGCCATCAACACTCTGCTGTCCGACAGCCACGCTCCCTTCAT 1472
Query 798 CTTCATCCTGGTCGTGGACCCCAGCATCCTGGCCGCGTGCCTAGAGAGCGCGGGCAACATGAAGGGCACGGCCG 871
||||||||||||.||||||||||||||.||||||||||||||.|||||||||||.||||||||||||||.||.|
Sbjct 1473 CTTCATCCTGGTGGTGGACCCCAGCATTCTGGCCGCGTGCCTGGAGAGCGCGGGTAACATGAAGGGCACAGCAG 1546
Query 872 ATAACGGCTACCTCTTCCTCAACCGCACTGTCACGCTGCCCTTCTCTGTGCCCATTATGGGCCGCCGCACCAAG 945
|.|||||||||||.||||||||||||||.||||||||.||||||||.|||||.|||||||||||.|||||||||
Sbjct 1547 ACAACGGCTACCTGTTCCTCAACCGCACAGTCACGCTACCCTTCTCCGTGCCGATTATGGGCCGTCGCACCAAG 1620
Query 946 CTGCAGTTCCTGCACGATGCGGTGCAGAGCCGCGACGACCTGTTGTACCGCGAGATGACG-------------C 1006
.||||||||||||||||||||||||..|||||.|||||.|||.|||.|||.||..||||| |
Sbjct 1621 TTGCAGTTCCTGCACGATGCGGTGCGTAGCCGGGACGATCTGCTGTTCCGGGAATTGACGATCAAGCTACAGCC 1694
Query 1007 GCA-AGCCGTGGCTGCCGGG-----GGACGCCGGGGGCGAGAGCGCGCAGCTGCTGGCGGTGCAGGCGCAGGCG 1074
||| |||| ||||| ||.||| .||.|||.|..|.|||||||||||||||.||.||||| |
Sbjct 1695 GCAGAGCC-------CCGGGAACTTGGGCGC---AGGTGAGGGTACTCAGCTGCTGGCGGTGGAGACGCAG--G 1756
Query 1075 GGGACG--GAGCGCGGGCAGGGCCGCATCGACGACGAGGCGGCGCGGCGAATCCAGGAGGCGCTCTTCTGCCTT 1146
|||||| ||||||...|||||||||.|.||||..||||||||||||||.||||||||||||||.|.||||||.
Sbjct 1757 GGGACGCCGAGCGCACACAGGGCCGCGTGGACGCGGAGGCGGCGCGGCGTATCCAGGAGGCGCTGTGCTGCCTG 1830
Query 1147 CACGACGAGCGCGACTGCCTCTACGAGTACGTGCCCGACAACGTGGTGTCCATGCGGCGCATCGTCAACACCGT 1220
||.||||||.|.||.|||||.||.||||||||||||||||||||||||||||||||||||||.||||||||.||
Sbjct 1831 CATGACGAGGGTGATTGCCTGTATGAGTACGTGCCCGACAACGTGGTGTCCATGCGGCGCATTGTCAACACGGT 1904
Query 1221 GCCCATCACCGTGCGCCTGCTNNGCAGCAGCAGCAG------CAGGGGGACTTTGGGGGCCCCACGCCGCGCCA 1288
|||||||||||||||||||.| ||||||||||||| |||...|||...|.|||.|||||.||||||||
Sbjct 1905 GCCCATCACCGTGCGCCTGTT--GCAGCAGCAGCAGCAGCAACAGCCCGACCGCGTGGGACCCACACCGCGCCA 1976
Query 1289 GGCGGTGGCGTGGGTGGTGCTCGCCAACCAGTGGCCGTGCCGCCTGAGCTGGGCGCTGCAGTGCCTGGAGGACC 1362
.||||||||.|||||.||.|||||.|||||||||||.||.|||||.|||||||.||||||.|||||||||||||
Sbjct 1977 CGCGGTGGCCTGGGTCGTCCTCGCTAACCAGTGGCCTTGTCGCCTCAGCTGGGTGCTGCAATGCCTGGAGGACC 2050
Query 1363 GGCAGCAGACCGGGGGCGCGCCCGAGGGCCGCGCGCGCCTCTGGGACGTTTTCCGCGACAACAGCCGCGAGCTG 1436
||||||||.|.|||||||||||.|||||.|||.||||.||||||||.||.|||.|||||||.||.|||||||||
Sbjct 2051 GGCAGCAGGCAGGGGGCGCGCCAGAGGGGCGCTCGCGTCTCTGGGATGTCTTCTGCGACAATAGTCGCGAGCTG 2124
Query 1437 CACACCATGACCAAGGCGTTGCAGAACGTGCTCGACCTGGACGGCGACCCCGAGCTCTTCGAGCGCTTCCTGGG 1510
|||||||||||||||||.|||||||||||.||.||||||||.||||||||.|||||.||.||||||||.||.||
Sbjct 2125 CACACCATGACCAAGGCCTTGCAGAACGTACTGGACCTGGATGGCGACCCTGAGCTTTTTGAGCGCTTTCTAGG 2198
Query 1511 CGCCGACTTCCCCTTCACCGTGGCCGAGGCGCAGAGCCTGCTGCGCTGCACGGTCAACCTGGACCACTCCATCC 1584
|.|.||.|||||||||||||||||||||||||||||..|||||||||||||.||||||||||||||.|||||||
Sbjct 2199 CACTGATTTCCCCTTCACCGTGGCCGAGGCGCAGAGTTTGCTGCGCTGCACAGTCAACCTGGACCATTCCATCC 2272
Query 1585 GCCGGCGCATGGGTCTCATCCGAGCCGTCAGCGCGCTCAAGCCGCCCAGCCCGCCCAAGTCCCCTACCCGCGAT 1658
||||.||||||||.||||||.|.|||||||||||||||||||||||||||||.|||||||||||..|||..||.
Sbjct 2273 GCCGCCGCATGGGCCTCATCAGGGCCGTCAGCGCGCTCAAGCCGCCCAGCCCACCCAAGTCCCCATCCCAGGAC 2346
Query 1659 ACCCCCCACGC---TGCCCACCGGGCCAACAGCGCCTCCAGG-GCGCCCCCGTCGGGCCGTGCCTCAGGGC--- 1725
...|||||.|| | |||| |.||||..|.|||| .|||| .||.|||...||||||..|..|||||.|
Sbjct 2347 GGTCCCCAGGCCAGT-CCCA--GAGCCATTATCGCC-GCAGGCACGTCCCATGCGGGCCAAGGATCAGGACACA 2416
Query 1726 ---AAGCCGGCGAAGGC-CACCACACTGGGGACTTGGCCCACAGGGGCAAGCTATGGCCGGTGGCCTGTGCGCT 1795
||| |||| ||.||.||..|||||..|.||||..|||||||||.|.|||||.|||||
Sbjct 2417 GTAAAG-------AGGCACATCAGACCCGGGACCGGACCCATGGGGGCAAGCCAAGGCCGATGGCC-------- 2475
Query 1796 CTTCCGTCCAGGGCAATCCAGCCCAGGTGGGCCT 1829
Sbjct 2476 ---------------------------------- 2475
