Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_14494
Subject:
NM_001368300.1
Aligned Length:
3334
Identities:
2835
Gaps:
487

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCCCCAAAGCACAAGAGTAGTGATGCTGGGAATTTGGATAGGCCAAAGAGAAGCCGTAAAGTGCTTCCTCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AAGTGAAAAGGTGAAAGTTCTCGACTTAATCAGGAAAGACAAAAAATCCTATGCTGAGGTTGCTAAGATCTACG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGAAGAATGAATCTTCCATCCGTGAAATTGTGAAGAAGGAAAAAGAAATTCGTGCTAGTTTTGCTGTCTCACCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCAACTGCTAAAGTGACGGCCACAGTGCGTGATAAGTGCTTAGTTAAGATGGAACAGGCACTGCATTTGTGGGT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGAAGAGATGAACAGAAAACGTGTTCCCATTGACAGCAACATGTTGCGCCAGAAAGCTTTGAGCCTATACCAAG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ACTTCTGCAAGGGATGCTCTGAAACTGACACCAAGCCATTTACTGCGAGTAAGGGATGGTTACACAGATTCAGG  444

Query    1  ------------------------------------------ATGGCCCAGGTAGCAGTGTCCACCCTGCCTGT  32
                                                      ||||||||||||||||||||||||||||||||
Sbjct  445  CATAGATTCTCACATCATTACAAGAAGAAGAAGAAGGGGATCATGGCCCAGGTAGCAGTGTCCACCCTGCCTGT  518

Query   33  TGAAGAAGAGTCCTCCTCAGAGACCAGGATGGTGGTGACATTCCTCGTGTCTGCCCTCGAATCCATGTGTAAAG  106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGAAGAAGAGTCCTCCTCAGAGACCAGGATGGTGGTGACATTCCTCGTGTCTGCCCTCGAATCCATGTGTAAAG  592

Query  107  AACTGGCCAAGTCCAAGGCAGAAGTGGCCTGCATCGCAGTGTACGAAACAGACGTGTTTGTCGTCGGAACCGAG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AACTGGCCAAGTCCAAGGCAGAAGTGGCCTGCATCGCAGTGTACGAAACAGACGTGTTTGTCGTCGGAACCGAG  666

Query  181  AGAGGATGCGCTTTTGTTAATGCCAGGACGGATTTTCAGAAAGATTTTGCAAAATACTGCGTTGCAGAGGGACT  254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGAGGATGCGCTTTTGTTAATGCCAGGACGGATTTTCAGAAAGATTTTGCAAAATACTGCGTTGCAGAGGGACT  740

Query  255  GTGTGAGGTGAAACCTCCCTGCCCTGTGAACGGGATGCAGGTCCACTCGGGCGAAACGGAAATACTCAGGAAGG  328
            ||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct  741  GTGTGAGGTGAAACCTCCCTGCCCTGTGAACGGGATGCAGGTCCACTCAGGCGAAACGGAAATACTCAGGAAGG  814

Query  329  CAGTGGAGGACTATTTCTGCTTTTGTTATGGTAAAGCCTTAGGGACAACAGTGATGGTGCCTGTTCCCTATGAG  402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CAGTGGAGGACTATTTCTGCTTTTGTTATGGTAAAGCCTTAGGGACAACAGTGATGGTGCCTGTTCCCTATGAG  888

Query  403  AAGATGCTGCGAGACCAGTCGGCTGTGGTAGTGCAGGGGCTTCCGGAAGGCGTTGCCTTTCAACACCCTGAGAA  476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AAGATGCTGCGAGACCAGTCGGCTGTGGTAGTGCAGGGGCTTCCGGAAGGCGTTGCCTTTCAACACCCTGAGAA  962

Query  477  TTACGACCTTGCAACCCTGAAATGGATTTTGGAGAACAAAGCAGGGATTTCATTCATCATAAATAGACCCTTCC  550
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TTACGACCTTGCAACCCTGAAATGGATTTTGGAGAACAAAGCAGGGATTTCATTCATCATAAATAGACCCTTCC  1036

Query  551  TAGGACCAGAGAGTCAGCTGGGTGGCCCTGGGATGGTAACAGATGCGGAGAGATCCATAGTATCACCAAGTGAA  624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TAGGACCAGAGAGTCAGCTGGGTGGCCCTGGGATGGTAACAGATGCGGAGAGATCCATAGTATCACCAAGTGAA  1110

Query  625  AGCTGCGGCCCCATCAATGTGAAAACTGAACCCATGGAAGATTCTGGCATTTCACTGAAAGCAGAAGCTGTCTC  698
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  AGCTGCGGCCCCATCAATGTGAAAACTGAACCCATGGAAGATTCTGGCATTTCACTGAAAGCAGAAGCTGTCTC  1184

Query  699  AGTCAAGAAAGAATCAGAAGATCCTAATTACTATCAATATAATATGCAAGGAAGCCACCCTTCTTCCACAAGCA  772
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  AGTCAAGAAAGAATCAGAAGATCCTAATTACTATCAATATAATATGCAAGGAAGCCACCCTTCTTCCACAAGCA  1258

Query  773  ATGAAGTAATAGAAATGGAATTACCAATGGAAGATTCCACTCCGCTGGTCCCTTCAGAAGAACCAAATGAGGAC  846
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  ATGAAGTAATAGAAATGGAATTACCAATGGAAGATTCCACTCCGCTGGTCCCTTCAGAAGAACCAAATGAGGAC  1332

Query  847  CCTGAAGCCGAGGTGAAAATCGAAGGAAACACAAATTCATCCAGTGTTACAAATTCTGCAGCAGGTGTTGAAGA  920
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CCTGAAGCCGAGGTGAAAATCGAAGGAAACACAAATTCATCCAGTGTTACAAATTCTGCAGCAGGTGTTGAAGA  1406

Query  921  TCTTAACATCGTTCAAGTGACTGTTCCAGATAATGAGAAGGAAAGATTATCAAGCATTGAAAAGATTAAACAGC  994
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TCTTAACATCGTTCAAGTGACTGTTCCAGATAATGAGAAGGAAAGATTATCAAGCATTGAAAAGATTAAACAGC  1480

Query  995  TAAGAGAACAAGTTAATGACCTCTTTAGCCGAAAATTTGGTGAAGCAATTGGCGTGGATTTCCCTGTGAAAGTT  1068
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TAAGAGAACAAGTTAATGACCTCTTTAGCCGAAAATTTGGTGAAGCAATTGGCGTGGATTTCCCTGTGAAAGTT  1554

Query 1069  CCCTACAGGAAGATCACATTCAACCCTGGCTGTGTGGTGATTGATGGCATGCCCCCGGGGGTGGTATTCAAGGC  1142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CCCTACAGGAAGATCACATTCAACCCTGGCTGTGTGGTGATTGATGGCATGCCCCCGGGGGTGGTATTCAAGGC  1628

Query 1143  CCCCGGCTATCTGGAAATCAGTTCCATGAGGAGGATCTTGGAGGCAGCTGAGTTTATCAAATTCACAGTCATCA  1216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  CCCCGGCTATCTGGAAATCAGTTCCATGAGGAGGATCTTGGAGGCAGCTGAGTTTATCAAATTCACAGTCATCA  1702

Query 1217  GGCCGCTTCCAGGGCTTGAGCTCAGTAATGTGGGAAAACGCAAGATAGACCAGGAGGGCCGTGTGTTTCAAGAA  1290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  GGCCGCTTCCAGGGCTTGAGCTCAGTAATGTGGGAAAACGCAAGATAGACCAGGAGGGCCGTGTGTTTCAAGAA  1776

Query 1291  AAGTGGGAGAGAGCGTATTTCTTCGTGGAAGTACAGAATATTCCAACATGTCTCATATGCAAACAAAGCATGTC  1364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  AAGTGGGAGAGAGCGTATTTCTTCGTGGAAGTACAGAATATTCCAACATGTCTCATATGCAAACAAAGCATGTC  1850

Query 1365  TGTGTCCAAAGAATATAACCTAAGACGCCACTATCAAACCAATCACAGCAAGCATTATGACCAGTATACGGAAA  1438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1851  TGTGTCCAAAGAATATAACCTAAGACGCCACTATCAAACCAATCACAGCAAGCATTATGACCAGTATATGGAAA  1924

Query 1439  GAATGCGTGACGAGAAGCTTCACGAGCTGAAAAAAGGGCTCAGGAAGTATCTCTTAGGCTCGTCAGACACCGAG  1512
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct 1925  GAATGCGTGACGAGAAGCTTCACGAGCTGAAAAAAGGGCTCAGGAAGTATCTCTTAGGCTCATCAGACACCGAG  1998

Query 1513  TGTCCCGAGCAAAAACAAGTGTTTGCAAACCCAAGTCCAACCCAGAAATCCCCCGTGCAGCCTGTAGAGGACCT  1586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  TGTCCCGAGCAAAAACAAGTGTTTGCAAACCCAAGTCCAACCCAGAAATCCCCCGTGCAGCCTGTAGAGGACCT  2072

Query 1587  AGCTGGGAACTTATGGGAGAAGTTACGTGAAAAAATCAGGTCTTTTGTGGCATATTCTATCGCAATCGATGAGA  1660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  AGCTGGGAACTTATGGGAGAAGTTACGTGAAAAAATCAGGTCTTTTGTGGCATATTCTATCGCAATCGATGAGA  2146

Query 1661  TCACGGATATAAATAATACCACCCAGTTGGCCATATTCATCCGTGGTGTCGATGAGAATTTCGATGTGTCCGAA  1734
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  TCACGGATATAAATAATACCACCCAGTTGGCCATATTCATCCGTGGTGTCGATGAGAATTTCGATGTGTCCGAA  2220

Query 1735  GAACTTCTGGACACGGTGCCCATGACGGGTACAAAATCTGGCAACGAGATCTTTTTGCGTGTTGAGAAGAGCCT  1808
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||.|||||
Sbjct 2221  GAACTTCTGGACACGGTGCCCATGACGGGTACAAAATCTGGCAACGAGATCTTTTCGCGTGTTGAGAAAAGCCT  2294

Query 1809  GAAAAAGTTCTGTATCAACTGGTCGAGATTAGTAAGCGTGGCCTCCACTGGCACCCCAGCGATGGTGGATGCCA  1882
            ||||||.|||||||||.|||||||||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  GAAAAACTTCTGTATCGACTGGTCGAAATTAGTAAGCGTGGCCTCCACTGGCACCCCAGCGATGGTGGATGCCA  2368

Query 1883  ATAACGGGCTTGTCACAAAACTGAAGTCCAGGGTGGCGACGTTCTGCAAGGGTGCGGAACTGAAGTCCATCTGT  1956
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  ATAACGGGCTTGTCACAAAACTGAAGTCCAGGGTGGCGACGTTCTGCAAGGGTGCGGAACTGAAGTCCATCTGT  2442

Query 1957  TGTATAATTCATCCGGAATCACTCTGTGCTCAGAAGTTGAAGATGGACCACGTCATGGACGTGGTAGTGAAGTC  2030
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  TGTATAATTCATCCGGAATCACTCTGTGCTCAGAAGTTGAAGATGGACCACGTCATGGACGTGGTAGTGAAGTC  2516

Query 2031  CGTGAACTGGATATGCTCCCGGGGACTGAACCACAGCGAGTTCACAACCTTGCTCTATGAGCTGGACAGCCAGT  2104
            ||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 2517  CGTGAACTGGATATGCTCCCGGGGACTGAACCACAGTGAGTTCACAACCTTGCTCTATGAGCTGGACAGCCAGT  2590

Query 2105  ATGGTAGCCTCCTGTACTACACGGAGATTAAGTGGCTCAGTCGCGGGCTCGTGCTAAAGAGATTTTTCGAATCC  2178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  ATGGTAGCCTCCTGTACTACACGGAGATTAAGTGGCTCAGTCGCGGGCTCGTGCTAAAGAGATTTTTCGAATCC  2664

Query 2179  TTGGAAGAAATCGACTCCTTCATGTCATCCAGAGGGAAACCCCTGCCTCAACTGAGCTCCATAGATTGGATCCG  2252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  TTGGAAGAAATCGACTCCTTCATGTCATCCAGAGGGAAACCCCTGCCTCAACTGAGCTCCATAGATTGGATCCG  2738

Query 2253  AGACCTGGCCTTCTTGGTTGACATGACGATGCATCTGAACGCTTTGAACATCTCTCTCCAAGGACACTCCCAAA  2326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739  AGACCTGGCCTTCTTGGTTGACATGACGATGCATCTGAACGCTTTGAACATCTCTCTCCAAGGACACTCCCAAA  2812

Query 2327  TCGTCACGCAGATGTATGACCTGATCCGGGCGTTCCTAGCAAAACTGTGCCTCTGGGAGACTCATTTGACGAGG  2400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813  TCGTCACGCAGATGTATGACCTGATCCGGGCGTTCCTAGCAAAACTGTGCCTCTGGGAGACTCATTTGACGAGG  2886

Query 2401  AATAATCTGGCCCACTTTCCCACCCTGAAATTGGTTTCCAGAAATGAAAGCGATGGCCTGAACTACATTCCCAA  2474
            ||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 2887  AATAATCTGGCCCACTTTCCCACCCTGAAATTGGCTTCCAGAAATGAAAGCGATGGCCTGAACTACATTCCCAA  2960

Query 2475  AATCGCGGAACTCAAGACCGAATTCCAGAAAAGGCTGTCTGATTTCAAACTCTACGAAAGCGAACTGACTCTGT  2548
            |||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961  AATCGCGGAACTCCAGACCGAATTCCAGAAAAGGCTGTCTGATTTCAAACTCTACGAAAGCGAACTGACTCTGT  3034

Query 2549  TCAGCTCCCCGTTTTCCACGAAGATCGACAGTGTGCACGAGGAGCTCCAGATGGAGGTTATCGACCTGCAATGC  2622
            |||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035  TCAGCTCCCCGTTCTCCACGAAGATCGACAGTGTGCACGAGGAGCTCCAGATGGAGGTTATCGACCTGCAATGC  3108

Query 2623  AACACGGTCCTGAAGACGAAATACGACAAGGTGGGAATACCAGAATTCTACAAGTACCTCTGGGGTAGCTACCC  2696
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109  AACACGGTCCTGAAGACGAAATACGACAAGGTGGGAATACCAGAATTCTACAAGTACCTCTGGGGTAGCTACCC  3182

Query 2697  GAAATACAAGCACCATTGCGCAAAGATTCTTTCCATGTTCGGGAGCACCTACATCTGCGAACAGCTGTTCTCCA  2770
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183  GAAATACAAGCACCATTGCGCAAAGATTCTTTCCATGTTCGGGAGCACCTACATCTGCGAACAGCTGTTCTCCA  3256

Query 2771  TTATGAAACTGAGCAAAACAAAATACTGCTCCCAGTTAAAGGATTCCCAGTGGGATTCTGTACTCCACCATCGC  2844
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3257  TTATGAAACTGAGCAAAACAAAATACTGCTCCCAGTTAAAGGATTCCCAGTGGGATTCTGTACTCCA-CATCGC  3329

Query 2845  AACG  2848
            ||||
Sbjct 3330  AACG  3333

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