Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14611
- Subject:
- NM_001005785.2
- Aligned Length:
- 2024
- Identities:
- 1243
- Gaps:
- 607
Alignment
Query 1 ATGTCTGCTGCAAATCCTGAGACTCCAAACTCAACCATCTCCAGAGAGGCCAGCACCCAGTCTTCATCAGCTGC 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTGCTGCAAATCCTGAGACTCCAAACTCAACCATCTCCAGAGAGGCCAGCACCCAGTCTTCATCAGCTGC 74
Query 75 AGCTAGCCAAGGCTGGGTGTTACCAGAAGGCAAAATCGTGCCAAACACTGTTTTTGTTGGTGGAATTGATGCTA 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AGCTAGCCAAGGCTGGGTGTTACCAGAAGGCAAAATCGTGCCAAACACTGTTTTTGTTGGTGGAATTGATGCTA 148
Query 149 GGATGGATGAAACTGAGATTGGAAGCTGCTTTGGTAGATACGGTTCAGTGAAAGAAGTGAAGATAATCACGAAT 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GGATGGATGAAACTGAGATTGGAAGCTGCTTTGGTAGATACGGTTCAGTGAAAGAAGTGAAGATAATCACGAAT 222
Query 223 CGAACTGGTGTGTCCAAAGGCTATGGATTTGTTTCGTTTGTTAATGACGTGGATGTCCAGAAGATAGTAGGATC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CGAACTGGTGTGTCCAAAGGCTATGGATTTGTTTCGTTTGTTAATGACGTGGATGTCCAGAAGATAGTAGGATC 296
Query 297 ACAGATACATTTCCATGGTAAAAAGCTGAAGCTGGGCCCTGCAATCAGGAAACAAAAGTTATGTGCTCGTCATG 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACAGATACATTTCCATGGTAAAAAGCTGAAGCTGGGCCCTGCAATCAGGAAACAAAAGTTATGTGCTCGTCATG 370
Query 371 TGCAGCCACGTCCTTTGGTAGTTAATCCTCCTCCTCCACCACAGTTTCAGAACGTCTGGCGGAATCCAAACACT 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGCAGCCACGTCCTTTGGTAGTTAATCCTCCTCCTCCACCACAGTTTCAGAACGTCTGGCGGAATCCAAACACT 444
Query 445 GAAACCTACCTGCAGCCCCAAATCACGCCGAATCCTGTAACTCAGCACGTTCAGTCTGCTGCAAATCCTGAGAC 518
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||..||.|||....
Sbjct 445 GAAACCTACCTGCAGCCCCAAATCACGCCGAATCCTGTAACTCAGCACGTTCAG------GCTTATTCTGCTTA 512
Query 519 TCCAAACTCAACCATCTCCAGAGAGGCCAGCACCCAGTCTTCATCAGCTGCAGCTAGCCAAGGCTGGGTGTTAC 592
||||.|.|||.| |||.||| |||.||| ||||.|||
Sbjct 513 TCCACATTCACC-----------AGGTCAG------GTCATCA--------------------CTGGATGT--- 546
Query 593 CAGAAGGCAAAATCGTGCCAAACACTGTTTTTGTTGGT------------GGAATTGATGCTAGGATGGATGAA 654
||| |||.|.|| ||||| ||.||
Sbjct 547 CAG---------------------------TTGCTTGTATATAATTATCAGGAAT--ATCCT------------ 579
Query 655 ACTGA----GATTGGAAGCTGCTTT---GG-------TAGATACGGTTCAGTGAAAGAAG--TGAAGATAATCA 712
|||.| |||| |.||.|| || |.|||| ||||| .| ||.|.|||||.|
Sbjct 580 ACTTATCCCGATT-----CAGCATTTCAGGTCACCACTGGATA----TCAGT------TGCCTGTATATAATTA 638
Query 713 -----CGAATCGAACTGGTGTGTCCAA------------AGGCTA----TGGATTT--GTTTCGTTTGT-TAAT 762
|...|| |||.| |.||||| |||..| |||||.| |||.|.|.|.| ||||
Sbjct 639 TCAGCCATTTC---CTGCT-TATCCAAGATCACCATTTCAGGTCACTGCTGGATATCAGTTGCCTGTATATAAT 708
Query 763 GA-CGTGGATGTCCAG-------AAGATAGTAGGATCACAGATACATTTCCATGGTAAAAAGCTGAAGCTGGGC 828
.| |..|.||.|||.| || || |||| |||||| ||| |.|.|
Sbjct 709 TATCAGGCATTTCCTGCTTATCCAA-AT-------TCAC-----CATTTC---------AAG-------TCGCC 753
Query 829 CCTGCA-ATCA-------GGAAACAAAAGTTATGTGCTCGTCATGTGCAGCCACGTCCTTTGGTAG-TTAATCC 893
.|||.| |||| |.|.|||| |||| ||||||..|||| | |||
Sbjct 754 ACTGGATATCAGTTCCCTGTATACAA---TTAT--------------CAGCCATTTCCT------GCTTA---- 800
Query 894 TCCTCCTCCACCACAGTTTCAGAACGTCTGGCGGAATCCAAACACTGAAACCTACCTGCAGCCCCAAATCACGC 967
|||...|.||||| |||||| || ||||| ||| .|.||||
Sbjct 801 TCCAAGTTCACCA---TTTCAG---GT---------------CACTG--------CTG------GATATCA--- 836
Query 968 CGAATCCTGTAACTCAGCACGTTCAGTCTGCTGCAAATCCTGAGACTCCAAACTCAACCATCTCCAG------- 1034
|...||||||..|.|..| |||| |||..|||||....||||||.|| |||||.||.||
Sbjct 837 -GTTGCCTGTATATAATTA---TCAG------GCATTTCCTGCTTATCCAAATTC-ACCATTTCAAGTCGCCAC 899
Query 1035 -AGAGGCCAGCACCCAGTCT----TCATCAG-------CTGCAGCTAGCCAAGGCTGGGTGTT-ACCAG--AAG 1093
.||...|||..|||.||.| |.||||| |||| .||.|||| .|| ||||| .||
Sbjct 900 TGGATATCAGTTCCCTGTATACAATTATCAGGCATTTCCTGC--TTATCCAA--------ATTCACCAGTTCAG 963
Query 1094 GCAAAATCGTGCCAAACACTGTTTTTGTTGGTGGAATTGATGCTAGGATGGATGAAACTGAGATTGGAAGCTGC 1167
| || |.||||| ||.|| .||.|||
Sbjct 964 G-----TC------ACCACTG--------------------------------------GATAT---CAGTTGC 985
Query 1168 TTTGGTAGATACGGTTCAGTGAAAGAAGTGAAGATAATCACGAA--TCGAACTGGTGTGTCCAA---------- 1229
.| |||.|.| ||.||||.|.| || |||.| |.|||||
Sbjct 986 CT--GTATACA----------------------ATTATCAGGCATTTC---CTGCT-TATCCAAGTTCACCATT 1031
Query 1230 --AGG----CTATGGATTT--GTTTCGTTTGT-TAATGA-CGTGGATGTCCAGAAGAT---AGTAGGATCACAG 1290
||| |..|||||.| |||.|.|.|.| ||||.| |..|.||.|||.|...|| ||| ||||
Sbjct 1032 TCAGGTCACCACTGGATATCAGTTGCCTGTATATAATTATCAGGCATTTCCTGCTTATCCAAGT----TCAC-- 1099
Query 1291 ATACATTTC----CA----TGGTAAAAAGCTGAAGCTGGGCCCTGCA-ATCAGGAAACAAAAGTTATGTGCTCG 1355
|||||| || |||..|..||.|| ||||.| || |.||||
Sbjct 1100 ---CATTTCAGGTCACCACTGGATATCAGTTG---------CCTGTATAT-----------AATTAT------- 1143
Query 1356 TCATGTGCAGCCACGTCCTTTGGTAG-TTAATCCTCCTCCTCCACCACAGTTTCAGAACGTCTGGCGGAATCCA 1428
|||.||..|||| | ||| |||...|.||||| |||||| |||
Sbjct 1144 -------CAGGCATTTCCT------GCTTA----TCCAAGTTCACCA---TTTCAG---GTC------------ 1182
Query 1429 AACACTGAAACCTACCTGCAGCCCCAAATCACGCCGAATCCTGTAACTCAGCACGTTCAGGC-TTACTCTGCTT 1501
|.||||| .|.|||| |...||||||..|.|..| |||||| ||.| ||||||
Sbjct 1183 ACCACTG-----------------GATATCA----GTTGCCTGTATATAATTA---TCAGGCATTTC-CTGCTT 1231
Query 1502 ATCCACATTCACCAGGTCAGGTCATCACTGGATGTCAGTTGCTTGTATATAATTATCAGGAATATCCTACTTAT 1575
|||||..|||||||..||||||||.||||||||.||||||||.|||||||||||||||||.||.||||.|||||
Sbjct 1232 ATCCAAGTTCACCATTTCAGGTCACCACTGGATATCAGTTGCCTGTATATAATTATCAGGCATTTCCTGCTTAT 1305
Query 1576 CCCGATTCAGCATTTCAGGTCACCACTGGATATCAGTTGCCTGTATATAATTATCAGCCATTTCCTGCTTATCC 1649
||...||||.|||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 1306 CCAAGTTCACCATTTCAGGTCACCACTGGATATCAGTTGCCTGTATATAATTATCAGGCATTTCCTGCTTATCC 1379
Query 1650 AAGATCACCATTTCAGGTCACTGCTGGATATCAGTTGCCTGTATATAATTATCAGGCATTTCCTGCTTATCCAA 1723
|||.|||||||||||||||||..|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AAGTTCACCATTTCAGGTCACCACTGGATATCAGTTGCCTGTATATAATTATCAGGCATTTCCTGCTTATCCAA 1453
Query 1724 ATTCACCATTTCAAGTCGCCACTGGATATCAGTTCCCTGTATGTGAAATTTGCAAAATACTGGTATTAAAGAAC 1797
|||||.||.||||.|||.||||||||||||||||||.||||| |.|.||.|.|.||.| |
Sbjct 1454 ATTCAGCAGTTCAGGTCACCACTGGATATCAGTTCCATGTAT---ACAATTACCAGATGC-------------C 1511
Query 1798 GCTGCAGCTTTTTTATGTCACT---------CAAAGG-TTAATC---GGA-------------------GTATC 1839
.|.|||| || |.|| |||||| ..|||| ||| |||||
Sbjct 1512 ACCGCAG--------TG-CCCTGTTGGGGAGCAAAGGAGAAATCTGTGGACCGAAGCATACAAATGGTGGTATC 1576
Query 1840 -------------------------- 1839
Sbjct 1577 TTGTCTGTTTAATCCAGAGAAGAGAC 1602
