Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14630
- Subject:
- XR_377419.3
- Aligned Length:
- 4137
- Identities:
- 1661
- Gaps:
- 2240
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CACCTCAGTTCAATCCAGAGTAGAAGCCCCACTGGTTTAGTTCCTAGAGTTAAAGAAGAGAAAGGGAGGAGCCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TAGGCGCAGCGCCTGGGCTTCAGCCTGGCCATCAGCTGCCAGCCAGTAGCGCTTTGCTCCGCTGATGCTCGGGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCGAGCTACAGGGTTTTAAACACGCCTCGCAGCGGCGCCCACTGGCCGCCTCCTCCCGGACCCTAACTCGTGCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTCCTCCTGCCCACGTCCCCTCCGCCCGCCAGGACCTGCGGGAGGAGGCCGACCCTCCTCGGCACACGGGCGGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCCAAGGCGCGCCCAGCGTCTCCACTGCACGCCCCGCTGGGGATCCGGCGCCGCGCACTTGGGTCCTAGGCCCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAGGGCGGGCTCGGCTCCCGGAAGAGGAGAGCGAGAGCGGCTGAAGGGGCTGGAGAGGGGCGGGCCAGGCTGGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGAGACGAGAGGGGGCGGGCCCGGCTGCGTTCGCCCAGCTAGCGCTGGGGAGCAGCGGGCGTCCGAACCCGAGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCACAGCTCAGCGACTCCGATCGTGACACCGGCCCCCGCACGATTCCCCAGGGCCCCGCCTAGGGAGCAGTCCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGCTTGCAGCCTTGGGTCCTCTCCCAGAATCCCAGAGACTCTAAGCTGCGAGCAGACGCGGGCCCCTGGGAAGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GAGGTCCCCAGACCAGAGAGGACACGCGCGACGCTAGGAAAGATCTGCGAGGTGCAGATCCACCGCGGGGGCCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CGGGGGGCGCAGACCTGCAGAGCTGGAGGCCGGCGGGAAGGTTGGCTGCTGGAGGAACGGTGCAGAGTAAATGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGAGAGCAAACTGGAATAACTCCTACCAGACAAGAAGGGAAGCAAGCCTGGCTGTAGACACCAGGTCTTCTGAA 888
Query 1 -----------------------------------------------------------------ATGGCTACT 9
|||||||||
Sbjct 889 AGCCATAGCAGTGCCTCAGAACAGGGCAGTGGCCGAGGCAATGGTGGGAGTGCCGAAGAGACCGCATGGCTACT 962
Query 10 GAAGG---GGCTGCCCAGTTAGGGAACAGA---GTGGCGGGCATGGTGTGTAGCCTATGGGTGCTGCTCCTGGT 77
||.|| |.|||.| |.|||||.|||| |||||||||||||||||.||.||.|||.|.|||.|.||.|.
Sbjct 963 GAGGGCACGACTGGC---TCAGGGAGCAGAGTGGTGGCGGGCATGGTGTGCAGTCTGTGGCTCCTGGTTCTAGG 1033
Query 78 GTCTTCAGTTCTGGCTCTGGAAGAGGTATTGCTGGACACCACCGGAGAGACATCTGAGATTGGCTGGCTCACCT 151
|||.||||||||.||||||||||||||..|||||||.|||||.||||||||.||||||||||||||||||||||
Sbjct 1034 GTCATCAGTTCTAGCTCTGGAAGAGGTGCTGCTGGATACCACAGGAGAGACCTCTGAGATTGGCTGGCTCACCT 1107
Query 152 ACCCACCAGGGGGGTGGGACGAGGTGAGTGTTCTGGACGACCAGCGACGCCTGACTCGGACCTTTGAGGCATGT 225
||||.|||||.||||||||.||||||||||||||.||.||||||||.||.||||||||||||||.||.|||||.
Sbjct 1108 ACCCGCCAGGTGGGTGGGATGAGGTGAGTGTTCTAGATGACCAGCGCCGTCTGACTCGGACCTTCGAAGCATGC 1181
Query 226 CATGTGGCAGGGGCCCCTCCAGGCACCGGGCAGGACAATTGGTTGCAGACACACTTTGTGGAGCGGCGCGGGGC 299
||.||.||||||..||||||.||..|.||.||||||||||||.|||||||||||||||||||.|||||.|||||
Sbjct 1182 CACGTTGCAGGGCTCCCTCCTGGTTCTGGCCAGGACAATTGGCTGCAGACACACTTTGTGGAACGGCGAGGGGC 1255
Query 300 CCAGAGGGCGCACATTCGACTCCACTTCTCTGTGCGGGCATGCTCCAGCCTGGGTGTGAGCGGCGGCACCTGCC 373
|||||||||.|||||.||.||.|||||||||||.||.||.||.|||||||||||||||||.||.||.|||||||
Sbjct 1256 CCAGAGGGCACACATCCGCCTTCACTTCTCTGTACGAGCCTGTTCCAGCCTGGGTGTGAGTGGGGGTACCTGCC 1329
Query 374 GGGAGACCTTCACCCTTTACTACCGTCAGGCTGAGGAGCCCGACAGCCCTGACAGCGTTTCCTCCTGGCACCTC 447
|.|||||||||||||||||||||||.||||||||.|||||.|||.||||.|||||..||.|..|||||||||||
Sbjct 1330 GAGAGACCTTCACCCTTTACTACCGGCAGGCTGATGAGCCAGACGGCCCCGACAGTATTGCGGCCTGGCACCTC 1403
Query 448 AAACGCTGGACCAAGGTGGACACAATTGCAGCAGACGAGAGCTTTCCCT-CCTCCTCCTCCTCCTCCTCCTCTT 520
||||||||||||||.||||||||||||||.|||||.|||||| |||||| |||||||.|||||.||||
Sbjct 1404 AAACGCTGGACCAAAGTGGACACAATTGCCGCAGATGAGAGC-TTCCCTGCCTCCTCTTCCTCTTCCT------ 1470
Query 521 CTTCCTCTGCAGCGTGGGCTGTGGGACCCCACGGGGCTGGGCAGCGGGCTGGACTGCAACTGAACGTCAAAGAG 594
|.||||||||||||||||||.||.|.||.|||||||..||||||||.|||||.|||||||||
Sbjct 1471 ------------CATGGGCTGTGGGACCCCACAGGACCGGTCAGCGGGTGGGACTGCAGCTGAATGTCAAAGAG 1532
Query 595 CGGAGCTTTGGGCCTCTCACCCAACGCGGCTTCTACGTGGCCTTCCAGGACACGGGGGCCTGCCTGGCCCTGGT 668
||.||||||||.||||||||.||.||.||||||||.|||||||||||||||||.|||||||||||||||||.||
Sbjct 1533 CGCAGCTTTGGTCCTCTCACTCAGCGTGGCTTCTATGTGGCCTTCCAGGACACAGGGGCCTGCCTGGCCCTTGT 1606
Query 669 CGCTGTCAGGCTCTTCTCCTACACCTG-CCCTGCCGTGCTCCGATCCTTTGCTTCCTTTCCAGAGACGCAGGCC 741
.||.||||.|||||||||||||||||| |||| ||||.||.||..|||||||.||.|||||.|||||.||||||
Sbjct 1607 GGCAGTCAAGCTCTTCTCCTACACCTGTCCCT-CCGTCCTGCGTGCCTTTGCCTCTTTTCCTGAGACACAGGCC 1679
Query 742 AGTGGGGCTGGGGGGGCCTCCCTGGTGGCAGCTGTGGGCACCTGTGTGGCTCATGCAGAGCCAGAGGAGGATGG 815
|||||.|||||.|||||.|||.|.|||||||||||||||||||||||.|||||||||||.||||||||||||||
Sbjct 1680 AGTGGAGCTGGAGGGGCTTCCTTAGTGGCAGCTGTGGGCACCTGTGTAGCTCATGCAGAACCAGAGGAGGATGG 1753
Query 816 AGTAGGGGGCCAGGCAGGAGGCAGCCCCCCCAGGCTGCACTGCAACGGGGAGGGCAAGTGGATGGTAGCTGTCG 889
||||||.|||||||||||.|||||||||||.|||.|.|||||.||.||.||.||||.|||||||||||||||.|
Sbjct 1754 AGTAGGAGGCCAGGCAGGGGGCAGCCCCCCAAGGTTACACTGTAATGGCGAAGGCAGGTGGATGGTAGCTGTGG 1827
Query 890 GGGGCTGCCGCTGCCAGCCTGGATACCAACCAGCACGAGGAGACAAGGCCTGCCAAGCCTGCCCACGGGGGCT- 962
|.|||||||||||||||||||||.||||.||.||.||.|||||||||..||||||||||||||| .|.|||.|
Sbjct 1828 GAGGCTGCCGCTGCCAGCCTGGACACCAGCCTGCTCGTGGAGACAAGCTCTGCCAAGCCTGCCC-TGAGGGATC 1900
Query 963 CTATAAGTCTTCT-GCTGGGAATGCTCCCTGCTCACCATGCCCTGCCCGCAGTCACGCTCCCAACCCAGCAGCC 1035
|||||||.| .|| ||||||||||.||||||.|||||.||.||.||||||||.|||.|.||..||||.||||||
Sbjct 1901 CTATAAGGC-CCTGGCTGGGAATGTTCCCTGTTCACCGTGTCCAGCCCGCAGCCACTCCCCTGACCCTGCAGCC 1973
Query 1036 CCCGTTTGCCCCTGCCTGGAGGGCTTCTACCGGGCCAGTTCCGACCCACCAGAGGCCCCCTGCACTGGTCCTCC 1109
||.||||||||.||.||..|.|||||||||.||||||||||.||||||||||||||.|||||||||||||||||
Sbjct 1974 CCAGTTTGCCCATGTCTCCAAGGCTTCTACAGGGCCAGTTCGGACCCACCAGAGGCTCCCTGCACTGGTCCTCC 2047
Query 1110 ATCGGCTCCCCAGGAGCTTTGGTTTGAGGTGCAAGGCTCAGCACTCATGCTACACTGGCGCCTGCCTCGGGAGC 1183
|||||||||||.||||||.||||||||||||||||||||.|||||||||||.||||||||.|||||||.|||||
Sbjct 2048 ATCGGCTCCCCGGGAGCTATGGTTTGAGGTGCAAGGCTCGGCACTCATGCTGCACTGGCGTCTGCCTCAGGAGC 2121
Query 1184 TGGGGGGTCGAGGGGACCTGCTCTTCAATGTCGTGTGCAAGGAGTGTGAAGGCCGCCAGGA-ACCTGCCAGCGG 1256
||||.||.||||||||.||||||||||||||.||||||||||||||||.|||.|.| ||| |.| |||||
Sbjct 2122 TGGGTGGACGAGGGGATCTGCTCTTCAATGTTGTGTGCAAGGAGTGTGGAGGTCAC--GGAGAGC--CCAGC-- 2189
Query 1257 TGGTGGGGGCACTTGTCACCGCTGCAGGGATGAGGTCCACTTCGACCCTCGCCAGAGAGGCCTGACTGAGAGCC 1330
.|||||||.|..||||.||||||||||||.|||||.||.||||||||.||||||||.||.|||||||||||.|
Sbjct 2190 -AGTGGGGGGATGTGTCGCCGCTGCAGGGACGAGGTGCATTTCGACCCCCGCCAGAGGGGACTGACTGAGAGTC 2262
Query 1331 GAGTGTTAGTGGGGGGACTCCGGGCACACGTACCCTACATCTTAGAGGTGCAGGCTGTTAATGGGGTGTCTGAG 1404
||||||||||.|||||.|||||.||||||||.||.||||||||.||.|||||||||||.|||||||||||||||
Sbjct 2263 GAGTGTTAGTTGGGGGGCTCCGAGCACACGTGCCATACATCTTGGAAGTGCAGGCTGTCAATGGGGTGTCTGAG 2336
Query 1405 CTCAGCCCTGACCCTCCTCAGGCTGCAGCCATCAATGTCAGCACCAGCCATGAAGTGCCCTCTGCTGTCCCTGT 1478
|||||||||||||||||.|||||.||||||||||||||||||||||||||.|||||.||.|||||.||||||||
Sbjct 2337 CTCAGCCCTGACCCTCCCCAGGCAGCAGCCATCAATGTCAGCACCAGCCACGAAGTCCCTTCTGCAGTCCCTGT 2410
Query 1479 GGTGCACCAGGTGAGCCGGGCATCCAACAGCATCACGGTGTCCTGGCCGCAGCCCGACCAGACCAATGGGAACA 1552
|.||||||||||||||||||||.|||||||||||||.||.||||||||.|||||.||.||.||.||||||||||
Sbjct 2411 GATGCACCAGGTGAGCCGGGCAGCCAACAGCATCACAGTATCCTGGCCACAGCCTGAGCAAACAAATGGGAACA 2484
Query 1553 TCCTGGACTATCAGCTCCGCTACTATGACCAGGCAGAAGACGAATCCCACTCCTTCACCCTGACCAGCGAGACC 1626
||||.|||||.|||||.|||||||||||||||||||||||.||||||||||||||||||.|||||||.||||||
Sbjct 2485 TCCTCGACTACCAGCTGCGCTACTATGACCAGGCAGAAGATGAATCCCACTCCTTCACCATGACCAGTGAGACC 2558
Query 1627 AACACTGCCACCGTGACACAGCTGAGCCCTGGCCACATCTATGGTTTCCAGGTGCGGGCCCGGACTGCTGCCGG 1700
|||||||||||.|||||||.|.||||||||||||||||||||||.||||||||||||||.||||||||.||.||
Sbjct 2559 AACACTGCCACTGTGACACGGTTGAGCCCTGGCCACATCTATGGCTTCCAGGTGCGGGCACGGACTGCAGCTGG 2632
Query 1701 CCACGGCCCCTACGGGGGCAAAGTCTATTTCCAGACACTTCCTCAAGGGGAGCTGTCTTCCCAGCTTCCGGA-A 1773
||||||||||||.|||||||||||||||||.||||||.|.||||||||.||||||||.|||||||||||.|| |
Sbjct 2633 CCACGGCCCCTATGGGGGCAAAGTCTATTTTCAGACATTGCCTCAAGGTGAGCTGTCCTCCCAGCTTCCAGAGA 2706
Query 1774 AGACTCTCCTTGGTGATCGGCTCCATCCTGGGGGCTTTGGCCTTCCTCCTGCTGGCAGCCATCACCGTGCTGGC 1847
|| ||.|||||||||||.||.||||||||||||||.|||||||||||.||.||||||||||||||.||.|||||
Sbjct 2707 AG-CTGTCCTTGGTGATTGGTTCCATCCTGGGGGCCTTGGCCTTCCTTCTACTGGCAGCCATCACTGTACTGGC 2779
Query 1848 GGTCGTCTTCCAGC------------------------------------------------------------ 1861
.|||.|||||||||
Sbjct 2780 TGTCATCTTCCAGCGGTGAGGCCCCTGTCACTCCTGTCCAACCTACCCCAGTACCATTCAAGTCCTGACAAACC 2853
Query 1862 -------------------------------------------------GGAAGCGGCGTGGGACTGGCTACAC 1886
|||||||.||||||||.||||||||
Sbjct 2854 CAGGAACCCCTGCAGCACTTCGCACATCCTTCTACTAGTTCATTGCAAAGGAAGCGCCGTGGGACCGGCTACAC 2927
Query 1887 GGAGCAGCTGCAGCAATACAGCAGCCCAGGACTCGGGGTGAAGTATTACATCGACCCCTCCACCTACGAGGACC 1960
.||.||.|||||.||||||||||||||||||||.||.|||||||
Sbjct 2928 AGAACAACTGCAACAATACAGCAGCCCAGGACTTGGAGTGAAGT------------------------------ 2971
Query 1961 CCTGTCAGGCCATCCGAGAACTTGCCCGGGAAGTCGATCCTGCTTATATCAAGATTGAGGAGGTCATTGGGACA 2034
Sbjct 2972 -------------------------------------------------------------------------- 2971
Query 2035 GGCTCTTTTGGAGAAGTGCGCCAGGGCCGCCTGCAGCCACGGGGACGGAGGGAGCAGACTGTGGCCATCCAGGC 2108
Sbjct 2972 -------------------------------------------------------------------------- 2971
Query 2109 CCTGTGGGCCGGGGGCGCCGAAAGCCTGCAGATGACCTTCCTGGGCCGGGCCGCAGTGCTGGGTCAGTTCCAGC 2182
Sbjct 2972 -------------------------------------------------------------------------- 2971
Query 2183 ACCCCAACATCCTGCGGCTGGAGGGCGTGGTCACCAAGAGCCGACCCCTCATGGTGCTGACGGAGTTCATGGAG 2256
Sbjct 2972 -------------------------------------------------------------------------- 2971
Query 2257 CTTGGCCCCCTGGACAGCTTCCTCAGGCAGCGGGAGGGCCAGTTCAGCAGCCTGCAGCTGGTGGCCATGCAGCG 2330
Sbjct 2972 -------------------------------------------------------------------------- 2971
Query 2331 GGGAGTGGCTGCTGCCATGCAGTACCTGTCCAGCTTTGCCTTCGTCCATCGCTCGCTGTCTGCCCACAGCGTGC 2404
Sbjct 2972 -------------------------------------------------------------------------- 2971
Query 2405 TGGTGAATAGCCACTTGGTGTGCAAGGTGGCCCGTCTTGGCCACAGTCCTCAGGGCCCAAGTTGTTTGCTTCGC 2478
Sbjct 2972 -------------------------------------------------------------------------- 2971
Query 2479 TGGGCAGCCCCAGAGGTCATTGCACATGGAAAGCATACAACATCCAGTGATGTCTGGAGCTTTGGGATACTCAT 2552
Sbjct 2972 -------------------------------------------------------------------------- 2971
Query 2553 GTGGGAAGTGATGAGTTATGGAGAACGGCCTTACTGGGACATGAGTGAGCAGGAGGTACTAAATGCAATAGAGC 2626
Sbjct 2972 -------------------------------------------------------------------------- 2971
Query 2627 AGGAGTTCCGGCTGCCCCCGCCTCCAGGCTGTCCTCCTGGATTACATCTACTTATGTTGGACACTTGGCAGAAG 2700
Sbjct 2972 -------------------------------------------------------------------------- 2971
Query 2701 GACCGTGCCCGGCGGCCTCATTTTGACCAGCTGGTGGCTGCATTTGACAAGATGATCCGCAAGCCAGATACCCT 2774
Sbjct 2972 -------------------------------------------------------------------------- 2971
Query 2775 GCAGGCTGGCGGGGACCCAGGGGAAAGGCCTTCCCAGGCCCTTCTGACCCCTGTGGCCCTGGACTTTCCTTGTC 2848
Sbjct 2972 -------------------------------------------------------------------------- 2971
Query 2849 TGGACTCACCCCAGGCCTGGCTTTCAGCCATTGGACTGGAGTGCTACCAGGACAACTTCTCCAAGTTTGGCCTC 2922
Sbjct 2972 -------------------------------------------------------------------------- 2971
Query 2923 TGTACCTTCAGTGATGTGGCTCAGCTCAGCCTAGAAGACCTGCCTGCCCTGGGCATCACCCTGGCTGGCCACCA 2996
Sbjct 2972 -------------------------------------------------------------------------- 2971
Query 2997 GAAGAAGCTGCTGCACCACATCCAGCTCCTTCAGCAACACCTGAGGCAGCAGGGCTCAGTGGAGGTC 3063
Sbjct 2972 ------------------------------------------------------------------- 2971
