Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_14803
• Subject: XM_024448079.1
• Aligned Length: 1562
• Identities: 933
• Gaps: 494

Alignment

Query    1  ATGGCTGACCTAATAGATGGGTACTGCCGGCTGGTGAATGGAACCTCGCAGTCATTTATCATCAGACCTCAGAA  74
                                                                     ||.|.||||    ||.|
Sbjct    1  ---------------------------------------------------------ATGAGCAGA----AGCA  13

Query   75  AG-GTGAGGTGC-----TGTTTCT------GAGCATTCCCAATT-GCGCTTCTACCAAATATTTAGCTGTGCTT  135
            || ||||    |     |.|||.|      |||        ||| |.|.||||||     |||.| |.||    
Sbjct   14  AGCGTGA----CAACAATTTTTATAGTGTAGAG--------ATTGGAGATTCTAC-----ATTCA-CAGT----  65

Query  136  GCCCCT--AACAGCCTGTTATCCTCTTTTAGGTAACTGTAAAAATGAAGACCAAATGAATAATTCAGCTCAGTA  207
               |||  |||     |.||||                 |.||.|.||.|||                    ||
Sbjct   66  ---CCTGAAAC-----GATATC-----------------AGAATTTAAAACC--------------------TA  94

Query  208  TAATCTGAGGA-CTTATTTTTCTAGGGATGGTGATCCGTTTCACACCTTCCACAAGCCAAGAGCTGGGTTTGAA  280
            ||..||.|||| |       ||.|||.||.|| ||.||     ||.|||         |.||            
Sbjct   95  TAGGCTCAGGAGC-------TCAAGGAATAGT-ATGCG-----CAGCTT---------ATGA------------  134

Query  281  TTGCCAACTTTCTTGTA--CAAAGTTGGCATTAT-AAGANAGCTNNG-------TTT--GAAT--------TGC  334
             |||||   ||||||.|  .||.||| |||  || |||| ||||..|       |||  ||||        |||
Sbjct  135  -TGCCA---TTCTTGAAAGAAATGTT-GCA--ATCAAGA-AGCTAAGCCGACCATTTCAGAATCAGACTCATGC  200

Query  335  CAA------CT------------TNCTTNTACAANNTNNNGCAACGAACAGGTCACTATCNNTNANAANAAAAN  390
            |||      ||            |.|||.|..||..|              ||.|  |||    |.||.||.|.
Sbjct  201  CAAGCGGGCCTACAGAGAGCTAGTTCTTATGAAATGT--------------GTTA--ATC----ACAAAAATAT  254

Query  391  CATTG--CTTATCAATATTNNNNNNNCNGNNNANNTCNCTATCAGTATANNNANNNGTATTACANNNTCAT--A  460
            .||||  |||.|.|||.||.......|. ...|..||.|||..||.||....|...|| |||||...||||  |
Sbjct  255  AATTGGCCTTTTGAATGTTTTCACACCA-CAGAAATCCCTAGAAGAATTTCAAGATGT-TTACATAGTCATGGA  326

Query  461  GCTGTTTCCTGGCAGCTCTGGCCCGTGTCTCAAAATNTNTGCTATCCAGNTGNTNCAAATCGAGGCGCC--GAA  532
            ||    ||.|||..||                ||||.|.||    |||..||.|.||.||.|||    |  ||.
Sbjct  327  GC----TCATGGATGC----------------AAATCTTTG----CCAAGTGATTCAGATGGAG----CTAGAT  372

Query  533  C---AAAAAAGCTCCTACTATTTTGTTAAAAAACCCAAGTCGTTCTATAGCTGTGGATGTGT---ATCTACCAC  600
            |   |||.||..|||||                       |.||||.||.|.|..|.|||||   |||.|.|||
Sbjct  373  CATGAAAGAATGTCCTA-----------------------CCTTCTCTATCAGATGCTGTGTGGAATCAAGCAC  423

Query  601  CTCTTCATTCT-CGAGA---------CGGCAGAGCT----GCCC------------GCAAA--------GCACG  640
              ||||||||| |..||         |||.|   ||    ||||            |.|||        ||||.
Sbjct  424  --CTTCATTCTGCTGGAATTATTCATCGGGA---CTTAAAGCCCAGTAATATAGTAGTAAAATCTGATTGCACT  492

Query  641  T--------------TTTGCTCT----AGCACTG---------------------------ATCT---------  660
            |              ||.|.|||    ||.||||                           ||.|         
Sbjct  493  TTGAAGATTCTTGACTTCGGTCTGGCCAGGACTGCAGGAACGAGTTTTATGATGACGCCTTATGTAGTGACTCG  566

Query  661  ---CTTCAAATCA------------------------TACA---AAAGCTATTGACCTCTCTTGTTGTACTAAG  704
               ||.||.|.||                        ||||   |||.| .|||||.|   |||     .|.||
Sbjct  567  CTACTACAGAGCACCCGAGGTCATCCTTGGCATGGGCTACAAGGAAAAC-GTTGACAT---TTG-----GTCAG  631

Query  705  TTGGTATTATACA-CA---GAGTGATTATCA----------TTTGTTGC---------TTCGTAGTGA-CCGTA  754
            ||||    .|.|| ||   |||..||.||||          ||||||.|         .||.||.||| |.||.
Sbjct  632  TTGG----GTGCATCATGGGAGAAATGATCAAAGGTGGTGTTTTGTTCCCAGGTACAGATCATATTGATCAGTG  701

Query  755  GAGAAAAATACACTATT----AGTGTCCCCTGATGATCGCCCGACCAGAGAGTCATGAATCTATGGCAG-AACT  823
            ||..|||.|    ||||    ||     |.||  ||.|     ||||   .|||.|||||..|| |.|| ||||
Sbjct  702  GAATAAAGT----TATTGAACAG-----CTTG--GAAC-----ACCA---TGTCCTGAATTCAT-GAAGAAACT  755

Query  824  CCTCCCAACAGTAAGGACTTACGTTGAAAACAGACCTAAATATGCTGGATATAGCTTTGAGAAACTCTTCCCTG  897
            .|..||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  756  GCAACCAACAGTAAGGACTTACGTTGAAAACAGACCTAAATATGCTGGATATAGCTTTGAGAAACTCTTCCCTG  829

Query  898  ATGTCCTTTTCCCAGCTGACTCAGAACACAACAAACTTAAAGCCAGTCAGGCAAGGGATTTGTTATCCAAAATG  971
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  830  ATGTCCTTTTCCCAGCTGACTCAGAACACAACAAACTTAAAGCCAGTCAGGCAAGGGATTTGTTATCCAAAATG  903

Query  972  CTGGTAATAGATGCATCTAAAAGGATCTCTGTAGATGAAGCTCTCCAACACCCGTACATCAATGTCTGGTATGA  1045
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  904  CTGGTAATAGATGCATCTAAAAGGATCTCTGTAGATGAAGCTCTCCAACACCCGTACATCAATGTCTGGTATGA  977

Query 1046  TCCTTCTGAAGCAGAAGCTCCACCACCAAAGATCCCTGACAAGCAGTTAGATGAAAGGGAACACACAATAGAAG  1119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  978  TCCTTCTGAAGCAGAAGCTCCACCACCAAAGATCCCTGACAAGCAGTTAGATGAAAGGGAACACACAATAGAAG  1051

Query 1120  AGTGGAAAGAATTGATATATAAGGAAGTTATGGACTTGGAGGAGAGAACCAAGAATGGAGTTATACGGGGGCAG  1193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052  AGTGGAAAGAATTGATATATAAGGAAGTTATGGACTTGGAGGAGAGAACCAAGAATGGAGTTATACGGGGGCAG  1125

Query 1194  CCCTCTCCTTTAGGTGCAGCAGTGATCAATGGCTCTCAGCATCCATCATCATCGTCGTCTGTCAATGATGTGTC  1267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126  CCCTCTCCTTTAGGTGCAGCAGTGATCAATGGCTCTCAGCATCCATCATCATCGTCGTCTGTCAATGATGTGTC  1199

Query 1268  TTCAATGTCAACAGATCCGACTTTGGCCTCTGATACAGACAGCAGTCTAGAAGCAGCAGCTGGGCCTCTGGGCT  1341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200  TTCAATGTCAACAGATCCGACTTTGGCCTCTGATACAGACAGCAGTCTAGAAGCAGCAGCTGGGCCTCTGGGCT  1273

Query 1342  GCTGTAGA  1349
            ||||||||
Sbjct 1274  GCTGTAGA  1281