Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_14853
• Subject: NM_001301854.1
• Aligned Length: 1318
• Identities: 790
• Gaps: 401

Alignment

Query    1  ATGGAGGTGGTGGACCCGCAGCAGCTGGGCATGTTCACGGAGGGCGAGCTGATGTCGGTGGGTATGGACACGTT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CATCCACCGCATCGACTCCACCGAGGTCATCTACCAGCCGCGCCGCAAGCGGGCCAAGCTCATCGGCAAGTACC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TGATGGGGGACCTGCTGGGGGAAGGCTCTTACGGCAAGGTGAAGGAGGTGCTGGACTCGGAGACGCTGTGCAGG  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  AGGGCCGTCAAGATCCTCAAGAAGAAGAAGTTGCGAAGGATCCCCAACGGGGAGGCCAACGTGAAGAAGGAAAT  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  TCAACTACTGAGGAGGTTACGGCACAAAAATGTCATCCAGCTGGTGGATGTGTTATACAACGAAGAGAAGCAGA  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AAATGTATATGGTGATGGAGTACTGCGTGTGTGGCATGCAGGAAATGCTGGACAGCGTGCCGGAGAAGCGTTTC  444
              ||||||||||||||||||||||||||.||||||||||||||.|||||||||||.||||||||||||||.|||
Sbjct    1  --ATGTATATGGTGATGGAGTACTGCGTATGTGGCATGCAGGAGATGCTGGACAGTGTGCCGGAGAAGCGCTTC  72

Query  445  CCAGTGTGCCAGGCCCACGGGTACTTCTGTCAGCTGATTGACGGCCTGGAGTACCTGCATAGCCAGGGCATTGT  518
            ||.||||||||.||.||.|||||||||.|.||||||||||||||||||||.|||||.||.||||||||||||||
Sbjct   73  CCTGTGTGCCAAGCTCATGGGTACTTCCGCCAGCTGATTGACGGCCTGGAATACCTACACAGCCAGGGCATTGT  146

Query  519  GCACAAGGACATCAAGCCGGGGAACCTGCTGCTCACCACCGGTGGCACCCTCAAAATCTCCGACCTGGGCGTGG  592
            .||||||||||||||||||||.||||||||.|||||||||..||||||.|||||.|||||||||||.||.||.|
Sbjct  147  TCACAAGGACATCAAGCCGGGCAACCTGCTACTCACCACCAATGGCACACTCAAGATCTCCGACCTCGGTGTTG  220

Query  593  CCGAGGCACTGCACCCGTTCGCGGCGGACGACACCTGCCGGACCAGCCAGGGCTCCCCGGCTTTCCAGCCGCCC  666
            |||||||.||||||||.|||||.|.|||.||||||||||||||.|||||||||||||||||.||||||||.||.
Sbjct  221  CCGAGGCCCTGCACCCTTTCGCTGTGGATGACACCTGCCGGACAAGCCAGGGCTCCCCGGCCTTCCAGCCTCCT  294

Query  667  GAGATTGCCAACGGCCTGGACACCTTCTCCGGCTTCAAGGTGGACATCTGGTCGGCTGGGGTCACCCTCTACAA  740
            |||||||||||.||.|||||||||||.||.||.||||||||||||||||||||.|||||||||||.||.|||||
Sbjct  295  GAGATTGCCAATGGACTGGACACCTTTTCAGGTTTCAAGGTGGACATCTGGTCAGCTGGGGTCACACTTTACAA  368

Query  741  CATCACCACGGGTCTGTACCCCTTCGAAGGGGACAACATCTACAAGTTGTTTGAGAACATCGGGAAGGGGAG-C  813
            ||||||||||||.||||||||.||.||.||||||||.|||||||||.|.|||||||||||.||| ||.|||| |
Sbjct  369  CATCACCACGGGCCTGTACCCATTTGAGGGGGACAATATCTACAAGCTCTTTGAGAACATTGGG-AGAGGAGAC  441

Query  814  TACGCCATCCCGGGCGACTGTGGCCCCCCGCTCTCTGACCTGCTGAAAGGGATGCTTGAGTACGAACCGGCCAA  887
            |.|.|||||||..|.|||||.|||||.||.|||||||||||.||...|||||||.|.|||||.||.||||||||
Sbjct  442  TTCACCATCCCTTGTGACTGCGGCCCACCACTCTCTGACCTACTCCGAGGGATGTTGGAGTATGAGCCGGCCAA  515

Query  888  GAGGTTCTCCATCCGGCAGATCCGGCAGCACAGCTGGTTCCGGAAGAAACATCCTCCGGCTGAAGCACCAGTGC  961
            |||||||||||||||.|||||..||||||||||||||||||||||||||||.||||.||||||.||.|..||.|
Sbjct  516  GAGGTTCTCCATCCGACAGATTAGGCAGCACAGCTGGTTCCGGAAGAAACACCCTCTGGCTGAGGCGCTCGTAC  589

Query  962  CCATCCCACCGAGCCCAGACACCAAGGACCGGTGGCGCAGCATGACTGTGGTGCCGTACTTGGAGGACCTGCAC  1035
            |.||||||||.|||||||||||.||||||||.||||||||.||||||||.|||||.|||.|||||||||||||.
Sbjct  590  CTATCCCACCAAGCCCAGACACTAAGGACCGCTGGCGCAGTATGACTGTAGTGCCCTACCTGGAGGACCTGCAT  663

Query 1036  GGC---GCGGACGAGGACGAG------GACCTCTTCGACATCGAGGATGACATCATCTACACTCAGGACTTCAC  1100
            |||   |||||.|||||.|||      |||.|.||.|||||.|||||.|.|||.||||||||.|||||||||||
Sbjct  664  GGCCGTGCGGAGGAGGAGGAGGAGGAAGACTTGTTTGACATTGAGGACGGCATTATCTACACCCAGGACTTCAC  737

Query 1101  GGTGCCCGGACAGGTCCCAGAAGAGGAGGCCAGTCACAATGGACAGCGCCGGGGCCTCCCCAAGGCCGTGTGTA  1174
            .|||||.||||||||||..||||||||.|...||||.|||||||||.|||...|..|.||||||||.||.|||.
Sbjct  738  AGTGCCTGGACAGGTCCTGGAAGAGGAAGTGGGTCAGAATGGACAGAGCCACAGTTTGCCCAAGGCTGTTTGTG  811

Query 1175  TGAACGGCACAGAGGCGGCGCAGCTGAGCACCA-----AATCCAG--GGCGGAGGGCCGGG--CCCCCAACCCT  1239
            ||||.||||||||   |.|.|||||.||||.||     ||.||||  |||.||   ||.||  ||.||||||||
Sbjct  812  TGAATGGCACAGA---GCCCCAGCTCAGCAGCAAGGTGAAGCCAGAAGGCCGA---CCTGGCACCGCCAACCCT  879

Query 1240  GCCCGCAAGGCCTGCTCCGCCAGCAGCAAGATCCGCCGGCTGTCGGCCTGCAAGCAGCAG  1299
            ||.|||||||..||||   ||||||.|||||||||||||||.||||||||||||||||||
Sbjct  880  GCGCGCAAGGTGTGCT---CCAGCAACAAGATCCGCCGGCTCTCGGCCTGCAAGCAGCAG  936