Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14884
- Subject:
- NM_009582.4
- Aligned Length:
- 2702
- Identities:
- 1508
- Gaps:
- 1039
Alignment
Query 1 ATGGCTTGCCTCCATGAGACCCGAACACCCTCTCCTTCCTTTGGGGGCTTTGTGTCTACCCTAAGTGAGGCATC 74
|||||.|||||||||||.||||||||||||||.||||||||||||||||||||||||||.|||||||||||.||
Sbjct 1 ATGGCCTGCCTCCATGAAACCCGAACACCCTCCCCTTCCTTTGGGGGCTTTGTGTCTACTCTAAGTGAGGCTTC 74
Query 75 CATGCGCAAGCTGGACCCAGACACTTCTGACTGCACTCCCGAGAAGGACCTGACGCCTACCCAGTGTGTACTTC 148
.|||||.||||||||.|||||||||||.||||||||.||||||||.|||||||||||.|||||.||||||||||
Sbjct 75 TATGCGAAAGCTGGATCCAGACACTTCAGACTGCACCCCCGAGAAAGACCTGACGCCCACCCAATGTGTACTTC 148
Query 149 GAGATGTGGTACCCCTTGGTGGGCAGGGTGGGGGAGGGCCCAGCCCCTCCCCAGGTGGAGAGCCGCCCCCTGAG 222
|||||||.||.||.||.||||||||||||||.|||||.||||||||||||||||||||||||||.|||||.|||
Sbjct 149 GAGATGTTGTGCCTCTCGGTGGGCAGGGTGGAGGAGGACCCAGCCCCTCCCCAGGTGGAGAGCCTCCCCCAGAG 222
Query 223 CCTTTTGCCAACAGTGTCCTGCAGCTACATGAGCAGGATGCAGGGGGCCCAGGGGGAGCAGCTGGGTCACCTGA 296
|||||||||||.||||||||.||||||||||||||||||.||||.||.|||||||||||..|||||||||||||
Sbjct 223 CCTTTTGCCAATAGTGTCCTCCAGCTACATGAGCAGGATACAGGTGGGCCAGGGGGAGCCACTGGGTCACCTGA 296
Query 297 GAGTCGGGCATCCAGAGTTCGAGCTGACGAGGTGCGACTGCAGTGCCAGAGTGGCAGTGGCTTCCTTGAGGGCC 370
||||||.|||||.||||||||||||||.|||||.||.||||||||||||||||||||||||||||||||.||.|
Sbjct 297 GAGTCGAGCATCTAGAGTTCGAGCTGATGAGGTACGTCTGCAGTGCCAGAGTGGCAGTGGCTTCCTTGAAGGTC 370
Query 371 TCTTTGGCTGCCTGCGCCCTGTCTGGACCATGATTGGCAAAGCCTACTCCACTGAGCACAAGCAGCAGCAGGAA 444
|.||||||||||||||||||||||||||.|||||||||||||||||||||||.||.||||||||.|||||||||
Sbjct 371 TTTTTGGCTGCCTGCGCCCTGTCTGGACAATGATTGGCAAAGCCTACTCCACAGAACACAAGCAACAGCAGGAA 444
Query 445 GACCTTTGGGAGGTCCCCTTTGAGGAAATCCTGGACCTGCAGTGGGTGGGCTCAGGGGCCCAGGGTGCTGTCTT 518
|||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||.|||||||||||.||
Sbjct 445 GACCTTTGGGAAGTCCCCTTTGAGGAAATCCTGGACCTGCAGTGGGTAGGCTCAGGGGCTCAGGGTGCTGTTTT 518
Query 519 CCTGGGGCGCTTCCACGGGGAGGAGGTGGCTGTGAAGAAGGTGCGAGACCTCAAAGAAACCGACATCAAGCA-C 591
||||||.||||||||||||||||||||.||||||||||||||.|||||.|||||.||.||.||||||||||| |
Sbjct 519 CCTGGGACGCTTCCACGGGGAGGAGGTAGCTGTGAAGAAGGTTCGAGATCTCAAGGAGACTGACATCAAGCATC 592
Query 592 TTGCGAAAGCTGAAGCACCCCAACATCATCACTTTCAAGGGTGTGTGCACCCAGGCTCCCTGCTACTGCATCCT 665
|| |||||||||||||||||||||||||||||||||||||||||.|||||.|||||.|||||||||||||||||
Sbjct 593 TT-CGAAAGCTGAAGCACCCCAACATCATCACTTTCAAGGGTGTTTGCACACAGGCCCCCTGCTACTGCATCCT 665
Query 666 CATGGAGTTCTGCGCCCAGGGCCAGCTGTATGAGGTACTGCGGGCTGGCCGCCCTGTCACCCCCTCCTTACTGG 739
.|||||.||||||||.||.||.|||||.||||||||.||..|.||.|||||||||||||||||||||||.||||
Sbjct 666 TATGGAATTCTGCGCTCAAGGACAGCTATATGAGGTGCTCAGAGCCGGCCGCCCTGTCACCCCCTCCTTGCTGG 739
Query 740 TTGACTGGTCCATGGGCATCGCTGGTGGCATGAACTACCTGCACCTGCACAAGATTATCCACAGGGATCTCAAG 813
||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||.||.||.|||
Sbjct 740 TTGACTGGTCCATGGGCATCGCTGGTGGCATGAATTACCTGCACCTGCACAAGATTATCCACAGAGACCTGAAG 813
Query 814 TCACCCAACATGCTAATCACCTACGACGATGTGGTGAAGATCTCAGATTTTGGCACTTCCAAGGAGCTGAGTGA 887
||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TCACCCAACATGCTAATCACATACGACGATGTGGTGAAGATCTCAGATTTTGGCACTTCCAAGGAGCTGAGTGA 887
Query 888 CAAGAGCACCAAGATGTCCTTTGCAGGGACAGTAGCCTGGATGGCCCCTGAGGTGATCCGCAATGAACCTGTGT 961
|||||||||||||||||||||||||||.|||||||||||||||||.|||||.||||||.|.|||||||||||||
Sbjct 888 CAAGAGCACCAAGATGTCCTTTGCAGGAACAGTAGCCTGGATGGCTCCTGAAGTGATCAGAAATGAACCTGTGT 961
Query 962 CTGAGAAGGTCGACATCTGGTCCTTTGGCGTGGTGCTATGGGAACTGCTGACTGGTGAGATCCCCTACAAAGAC 1035
||||||||||.|||||||||||||||||.|||||||||||||||||.||||||||.|||||.|||||||||||.
Sbjct 962 CTGAGAAGGTTGACATCTGGTCCTTTGGGGTGGTGCTATGGGAACTACTGACTGGAGAGATTCCCTACAAAGAT 1035
Query 1036 GTAGATTCCTCAGCCATTATCTGGGGTGTGGGAAGCAACAGTCTCCATCTGCCCGTGCCCTCCAGTTGCCCAGA 1109
|||||||||||||||||.|||||||||||||||||||||||||||||.|||||.||.||||||||.||||||||
Sbjct 1036 GTAGATTCCTCAGCCATCATCTGGGGTGTGGGAAGCAACAGTCTCCACCTGCCTGTACCCTCCAGCTGCCCAGA 1109
Query 1110 TGGTTTCAAGATCCTGCTTCGCCAGTGCTGGAATAGCAAACCACGAAATCGCCCATCATTCCGACAGATCCTGC 1183
||||||.||.||.||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||.|||
Sbjct 1110 TGGTTTTAAAATTCTACTTCGCCAGTGCTGGAACAGCAAACCACGAAATCGCCCATCATTCCGACAGATCTTGC 1183
Query 1184 TGCATCTGGACATTGCCTCAGCTGATGTACTCTCCACACCCCAGGAGACTTACTTTAAGTCCCAGGCAGAGTGG 1257
||||.||||||||.|||||.||||||||.|||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 1184 TGCACCTGGACATCGCCTCCGCTGATGTGCTCTCTACACCCCAGGAGACTTACTTTAAGTCCCAGGCAGAGTGG 1257
Query 1258 CGGGAAGAAGTAAAACTGCACTTTGAAAAGATTAAGTCAGAAGGGACCTGTCTGCACCGCCTAGAAGAGGAACT 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CGGGAAGAAGTAAAACTGCACTTTGAAAAGATTAAGTCAGAAGGGACCTGTCTGCACCGCCTAGAAGAGGAACT 1331
Query 1332 GGTGATGAGGAGGAGGGAGGAGCTCAGACACGCCCTGGACATCAGGGAGCACTATGAAAGGAAGCTGGAGAGAG 1405
|||||||.||||.|||||||||||||||||.|||||||||||||||||||||||||||.|||||.|||||||||
Sbjct 1332 GGTGATGCGGAGAAGGGAGGAGCTCAGACATGCCCTGGACATCAGGGAGCACTATGAACGGAAGTTGGAGAGAG 1405
Query 1406 CCAACAACCTGTATATGGAACTTAATGCCCTCATGTTGCAGCTGGAACTCAAGGAGAGGGAGCTGCTCAGGCGA 1479
|||||||||||||.||||||||.||||||||||||.||||.||.||||||||.||||||||..|||||||||||
Sbjct 1406 CCAACAACCTGTACATGGAACTGAATGCCCTCATGCTGCAACTAGAACTCAAAGAGAGGGAATTGCTCAGGCGA 1479
Query 1480 GAGCAAGCTTTAGAGCGGAGGTGCCCAGGCCTGCTGAAGCCACACCCTTCCCGGGGCCCCCAGCTTCCCTCCCT 1553
|||||.||||||||..||.||||.||.||.||.||.|||.||||||||||.||||||| .|||
Sbjct 1480 GAGCAGGCTTTAGAAAGGCGGTGTCCTGGTCTACTAAAGTCACACCCTTCTCGGGGCC------------TCCT 1541
Query 1554 CCAT-GAAAGCCACTCGTATTCCTTGTA------CATAGAGAAA---TATTT---ATATAAATTAT-------- 1606
.||| |||| |||| .||.| |||..||||| .|..| |.|.|||.|.|
Sbjct 1542 ACATGGAAA--CACT--------ATGGAGAAGCTCATCAAGAAAAGGAACGTGCCACAGAAACTGTCGCCCCAC 1605
Query 1607 -----------ATATAT-----ATACATA--------TATATATA-TATATGC-GCCACATAATCAACAGAAAG 1654
|.|||| |.|||.| ||..||.| ||.|||| |||..| ||...|
Sbjct 1606 AGCAAAAGGCCAGATATTCTCAAGACAGAGTCGTTGCTACCTAAACTAGATGCAGCCCTA--------AGTGGG 1671
Query 1655 ATGGGGC--------TGTCCCAGCCGTAAG---------TCAGGCTCGAGGGAGACTG-------ATCCCC--- 1701
.|||||| ||||| |||| ||| .||.||.||||.|.| |..|||
Sbjct 1672 GTGGGGCTTCCTGGGTGTCC------TAAGGGCCCCCCTTCA-CCTGGAAGGAGTCGGCGTGGCAAGACCCGTC 1738
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 1739 ACCGAAAGGCCAGTGCCAAGGGCAGCTGTGGAGACCTGCCTGGGCTTCGTGCAGCTTTGCCACCCCATGAGCCT 1812
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 1813 GGAGGACTAGGAAGCCCAGGGGGCCTAGGAGTGGGCCCTTCAGCTTGGGATGCTTGCCCCCCTGCTCTCCGTGG 1886
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 1887 ACTCCACCATGACCTTCTACTCCGAAAGATGTCATCATCATCCCCAGACCTGCTATCAGCAGCGCTGGGAGCCC 1960
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 1961 GAGGCCGAGGGGCTACAGGGGGAGCTCGGGATCCTGGCTCACCACCTCCACCCCAGGGCGATACTCCTCCAAGT 2034
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 2035 GAGGGATCAGCTCCTGGTTCCACCAGCCCAGATTCGCCTGGGGGAGCTAAAGGGGAACCCCCTCCACCAGTAGG 2108
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 2109 GCCTGGAGAAGGTGTGGGGCTGCTGGGAACTGGAAGGGAAGGGACTGCAGGCCGGGGAGGAAACCGGGCTGGGT 2182
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 2183 CCCAGCACTTGACCCCCGCTGCGCTGCTGTACAGGGCTGCTGTGACTCGAAGTCAGAAACGTGGTATCTCATCT 2256
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 2257 GAAGAAGAAGAAGGAGAGGTAGACAGTGAAGTAGAGCTACCCCCAAGTCAAAGGTGGCCTCAGGGCCCGAACAT 2330
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 2331 GCGTCAGTCACTATCTACATTCAGCTCAGAGAACCCATCAGATGTGGAGGAAGGTACAGCTAGTGAGCCTTCCC 2404
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 2405 CAAGTGGCACACCAGAAGTTGGCAGTACCAACACTGATGAGCGACCAGATGAACGATCTGATGACATGTGCTCA 2478
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 2479 CAGGGCTCAGAAATTCCACTGGACCTACCTACTTCAGAGGTGGTCCCTGAACGTGAAGCCAGCTCCTTGCCCAT 2552
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 2553 GCAACACCAGGATGGCCAGGGCCCCAATCCTGAAGACTCAGACTGTGACAGCACTGAATTGGACAACTCCAACA 2626
Query 1702 -------------------------------------- 1701
Sbjct 2627 GCATTGATGCCTTGCGGCCCCCAGCCTCCCTTCCTCCA 2664
