Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15089
- Subject:
- XR_001737470.1
- Aligned Length:
- 2486
- Identities:
- 1636
- Gaps:
- 781
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACGCATTTCCGTCGCCGGGAGGAAGGGGTGTGTGTTTCGCCTGCGCAGTGGTCCTGGCCACCGGCTCGCGGCGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGGAGGCTGCTCCCAGCCGCGCCCGAGTCAGACTCGGGTGGGGGTCCCGGCGGCGGTAGCGGCGGCGGCGGTG 148
Query 1 -----ATGTCGTGGCTCTTCGGCATTAACAAGGGCCCCAAGGGTGAAGACGCGGGGCCGCCGCCGCCTTTGCCG 69
||||||||||||||||||.||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 149 CGAGCATGTCGTGGCTCTTCGGCGTTAACAAGGGCCCCAAGGGTGAAGGCGCGGGGCCGCCGCCGCCTTTGCCG 222
Query 70 CCCGCGCAGCCCGGGGCCGAGGGCGGCGGGGACCGCGGCTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAG 143
||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 223 CCCGCGCAGCCCGGGGCCGAGGGCGGCGGGGACCGCGGTTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAG 296
Query 144 CAACTTCGACCCCACCGGCCTGGAGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTATGCCAAGG 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 297 CAACTTCGACCCCACCGGCCTGGAGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTACGCCAAGG 370
Query 218 ACGCCCTGAATCTGGCACAGATGCAGGAGCAGACGCTGCAGTTGGAGCAACAGTCCAAGCTCAAAGAGTATGAG 291
|.||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AGGCCCTGAATCTGGCGCAGATGCAGGAGCAGACGCTGCAGTTGGAGCAACAGTCCAAGCTCAAAGAGTATGAG 444
Query 292 GCCGCCGTGGAGCAGCTCAAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGA 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GCCGCCGTGGAGCAGCTCAAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGA 518
Query 366 GACCCGGCAGCACCAGGCCAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGC 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GACCCGGCAGCACCAGGCCAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGC 592
Query 440 AGCAGCAACTTCTCAATGAGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGA 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AGCAGCAACTTCTCAATGAGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGA 666
Query 514 GCCACCGTGGAGCGGGAGATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGGCCGAGGCCCGGGCGCG 587
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 667 GCCACCGTGGAGCGGGAGATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGACCGAGGCCCGGGCGCG 740
Query 588 CGCCAAGGCCGAGCGGGAGAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGGCCGAGCACCGTCAGA 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 741 CGCCAAGGCCGAGCGGGAGAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGTCCGAGCACCGTCAGA 814
Query 662 CCGTCTTGGAGTCCATCAGGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACTGGGAC 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 815 CCGTCTTGGAGTCCATCAGGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACCGGGAC 888
Query 736 AAAGTGACAGCCACGGTGGCTGGGCTGACGCTGCTGGCTGTTGGGGTCTACTCAGCCAAGAATGCCAC-GCTTG 808
|||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.|| || .|
Sbjct 889 AAAGTGACAGCCACGGTGGCTGGGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAAGAATGCGACAGC-CG 961
Query 809 TCGCCGGCCGCTTCATCGAGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTT 882
||.|.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 962 TCACTGGCCGCTTCATCGAGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTG 1035
Query 883 GAGGCGCTGCGGCACCCCATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGCGCTGGAGGGTGTTGT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 1036 GAGGCGCTGCGGCACCCCATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGTGCTGGAGGGTGTTGT 1109
Query 957 GCTCAGTCCCAGCCTGGAAGCACGGGTGCGCGACATCGCCATAGCAACAAGGAACACCAAGAAGAACCGCAGCC 1030
|||.||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||..|||
Sbjct 1110 GCTTAGTCCCAGCCTGGAAGCACGGGTGCGCGACATCGCCATAGCAACCAGGAACACCAAGAAGAACCGGGGCC 1183
Query 1031 TGTACAGGAACATCCTGATGTACGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCAC 1104
||||||||.||||||||.||||.|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 TGTACAGGCACATCCTGCTGTATGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCAC 1257
Query 1105 TCAGGCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCA 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TCAGGCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCA 1331
Query 1179 CAAGCTCTTTGACTGGGCCAATACCAGCCGGCGCGGCCTCCTGCTCTTTGTGGATGAAGCGGACGCCTTCCTTC 1252
||||||||||||||||||||||||||||||||||||
Sbjct 1332 CAAGCTCTTTGACTGGGCCAATACCAGCCGGCGCGG-------------------------------------- 1367
Query 1253 GGAAGCGAGCCACCGAGAAGATAAGCGAGGACCTCAGGGCCACACTGAACGCCTTCCTGTACCGCACGGGCCAG 1326
|||.||||||||.||||||||||.|||||||||||||||||||||||||.||.||||||.
Sbjct 1368 --------------GAGGAGATAAGCAAGGACCTCAGAGCCACACTGAACGCCTTCCTGTACCACATGGGCCAA 1427
Query 1327 CACAGCAACAAGTTCATGCTGGTCCTGGCCAGCAACCAACCAGAGCAGTTCGACTGGGCCATCAATGACCGCAT 1400
|||||||||||.|||||||||||||||||||||||.|..||.||||||||||||||.||||||||...||||||
Sbjct 1428 CACAGCAACAAATTCATGCTGGTCCTGGCCAGCAATCTGCCTGAGCAGTTCGACTGTGCCATCAACAGCCGCAT 1501
Query 1401 CAATGAGATGGTCCACTTCGACCTGCCAGGGCAGGAGGAACGGGAGCGCCTGGTGAGAATGTATTTTGACAAGT 1474
..|.|.|||||||||||||||||||||...|||||||||.||||||||||||||||||.||.||||||||||.|
Sbjct 1502 TGACGTGATGGTCCACTTCGACCTGCCGCAGCAGGAGGAGCGGGAGCGCCTGGTGAGACTGCATTTTGACAACT 1575
Query 1475 ATGTTCTTAAGCCGGCCACAGAAGGAAAGCAGCGCCTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGTGCTCG 1548
.|||||||||||||||||||||||||||.|.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576 GTGTTCTTAAGCCGGCCACAGAAGGAAAACGGCGCCTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGTGCTCG 1649
Query 1549 GAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCAGGCCACGGC 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 GAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCAGGCCACGGC 1723
Query 1623 GTATGCCTCCGAGGACGGGGTCCTGACCGAGGCCATGATGGACACCCGCGTGCAAGATGCTGTCCAGCAGCACC 1696
.|||||||||.|||||||||||||.||.|||||||||||||||.||.|.|||||||||||||||||||||.|||
Sbjct 1724 ATATGCCTCCAAGGACGGGGTCCTCACTGAGGCCATGATGGACGCCTGTGTGCAAGATGCTGTCCAGCAGTACC 1797
Query 1697 AGCAGAAGATGTGCTGGCTGAAGGCGGAAGGGCCTGGGCGTGGGGACGAGCCCTCCCCATCC------------ 1758
..|||||||||.||||||||||||||||.|||||||||||.||||.|||||.|.|||.||||
Sbjct 1798 GACAGAAGATGCGCTGGCTGAAGGCGGAGGGGCCTGGGCGCGGGGTCGAGCACCCCCTATCCGGAGTCCAAGGC 1871
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 1872 GAGACCCTCACCTCATGGAGCCTGGCCACGGACCCCTCCTACCCCTGCCTTGCCGGCCCCTGCACATTTAGGAT 1945
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 1946 ATGCTCCTGGATGGGGACTGGGCTGTGCCCAGGGCCTCTGTCCCCCAGGATGTCTTGTGGTGGCGGTCGGCCGT 2019
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 2020 TCTGCCCCCCAGGGCACCCCCTGTTGTAGGCACTGGCTAGGGAGGGGCAGGCCTCCTTCCTGCCCCTCGAGACA 2093
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 2094 CTCTTGGGAGATGCATTTTCCGTCTGGCTCACAGGGGGAGGGTGAGGCTTTGTACCCCAGCCCCTGCCCAGGCC 2167
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 2168 ACTGTGAGGGTGGGTGCTGGCTGAGCCCCTGGGGCAGAAGGAGTGGGGCAGGCGGGGTCTTTGTTCTCGGCTCC 2241
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 2242 CACAGCAGAGCCAGGTGAGGGGGGGCCTGCCAGGACTAGACAGAAGTGGGGCGGCCTGAACCCTGCTTCCAGCC 2315
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 2316 ATGGCCAGGGGCCACGGAACCCGGCAGGGGTGTCTGAGGCCGCCCTGTCAGCTGGCCGGTCCAAGCCTGTGGCT 2389
Query 1759 -------------------------------------------- 1758
Sbjct 2390 GGAGCTGGTGTGTGTTTATCTAATAAAGTCCCACAGGTGCCTCA 2433
