Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15443
- Subject:
- XR_001743373.1
- Aligned Length:
- 3244
- Identities:
- 945
- Gaps:
- 2158
Alignment
Query 1 ----------------------ATGGCCGTCATGGCGCCCCGAACCCTCGTCCTGCTACTCTCGGGGGCTCTGG 52
.||| .||||||||||||||||.||||.|||||||.|||||.|||||.||||
Sbjct 1 ATATTTTTCCCAGACGCGGAGGTTGG-GGTCATGGCGCCCCGAAGCCTCCTCCTGCTGCTCTCAGGGGCCCTGG 73
Query 53 CCCTGACCCAGACCTGGGCGGGCTCTCACTCCATGAGGTATTTCTTCACATCCGTGTCCCGGCCCGGCCGCGGG 126
||||||||.|.||.|||||||||||.||||||.|||||||||||..|||..|.|||||.|||||||||||||||
Sbjct 74 CCCTGACCGATACTTGGGCGGGCTCCCACTCCTTGAGGTATTTCAGCACCGCTGTGTCGCGGCCCGGCCGCGGG 147
Query 127 GAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCA 200
||||||||||.||||||.||||..|||||.|||||||||||.|||.||||||||||||||||||||||||..|.
Sbjct 148 GAGCCCCGCTACATCGCCGTGGAGTACGTAGACGACACGCAATTCCTGCGGTTCGACAGCGACGCCGCGATTCC 221
Query 201 GAGGATGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGTCCGGAGTATTGGGACGGGGA-GACACGGAAAGTG 273
|||||||||||||||||.|||||||.|.|||||.|||||.|||.|||||||||| |.||| .|||.||.|.|..
Sbjct 222 GAGGATGGAGCCGCGGGAGCCGTGGGTGGAGCAAGAGGGGCCGCAGTATTGGGA-GTGGACCACAGGGTACGCC 294
Query 274 AAGGCCCACTCACAGACTCACCGAGTGGACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTTC 347
||||||.||.||||||||.|||||||||.||||.|||.|||||.|.||..||||||||||||||||||.||.||
Sbjct 295 AAGGCCAACGCACAGACTGACCGAGTGGCCCTGAGGAACCTGCTCCGCCGCTACAACCAGAGCGAGGCTGGGTC 368
Query 348 TCACACCGTCCAGAGGATGTATGGCTGCGACGTGGGGTCGGACTGGCGCTTCCTCCGCGGGTACCACCAGTACG 421
|||||||.|||||.|.|||.|||||||||||.|||||.|.|||.|.|||.|||||||||||||.||||||.|||
Sbjct 369 TCACACCCTCCAGGGAATGAATGGCTGCGACATGGGGCCCGACGGACGCCTCCTCCGCGGGTATCACCAGCACG 442
Query 422 CCTACGACGGCAAGGATTACATCGCCCTGAAAGAGGACCTGCGCCCTTGGACCGCGGCGGACATGGCAGCTCAG 495
|.|||||||||||||||||||||.|||||||.||||||||||||.|.||||||||||||||||..|..||||||
Sbjct 443 CGTACGACGGCAAGGATTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACCGTGGCTCAG 516
Query 496 ACCACCAAGCACAAGTGGGAGGC---GGCCCATGTGGCGGAGCAGTTGAGAGCCTACCTGGAGGGCACGTGCGT 566
|.||||.|||.|...|..||||| ||...|| ||.|||.||||.||..||||||||||||||..||||.|
Sbjct 517 ATCACCCAGCGCTTCTATGAGGCAGAGGAATAT---GCAGAGGAGTTCAGGACCTACCTGGAGGGCGAGTGCCT 587
Query 567 GGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCACGGACGCCCCCAAAACGCATA--- 637
|||||.|||||||||||||.|||||||.||||||||||||||.||||||.|.|| .||.|.|||.|||.|
Sbjct 588 GGAGTTGCTCCGCAGATACTTGGAGAATGGGAAGGAGACGCTACAGCGCGCAGA--TCCTCCAAAGGCACACGT 659
Query 638 TGACTCACCACGCTGTCTCTGACCATGAAGCCACCCTGAGGTGCTGGGCCCTGAGCTTCTACCCTGCGGAGATC 711
|| |.||||||.|..|||||||||||||.||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 660 TG-CCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATC 732
Query 712 ACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACGGAGCTCGTGGAGACCAGGCCTGCAGGGGA 785
||.||||||||||||||||||||||||||.||||||||||||||.|||||.|||||||||||||||||||||||
Sbjct 733 ACGCTGACCTGGCAGCGGGATGGGGAGGAACAGACCCAGGACACAGAGCTTGTGGAGACCAGGCCTGCAGGGGA 806
Query 786 TGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGACAGGAGCAGAGATACACCTGCCATGTGCAGC 859
|||||||||||||||||||||.|||||||||||||||.|||||.||||.|||||||||||.|||||||||||||
Sbjct 807 TGGAACCTTCCAGAAGTGGGCCGCTGTGGTGGTGCCTCCTGGAGAGGAACAGAGATACACATGCCATGTGCAGC 880
Query 860 ATGAGGGTTTGCCCAAGCCCCTCACCCTGAGATGGGAGCCGTCTTCCCAGCCCACCATCCCCATCGTGGGCATC 933
|.|||||..|||||.|||||||||.||||||||||||||.||||.|||||||||||||||||||||||||||||
Sbjct 881 ACGAGGGGCTGCCCCAGCCCCTCATCCTGAGATGGGAGCAGTCTCCCCAGCCCACCATCCCCATCGTGGGCATC 954
Query 934 ATTGCTGGCCTGGTTCTCTTTGGAGCTGTGATCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAGGAAGAG 1007
.||||||||||.|||.||.|||||||||||.||||||||||||||||||||||||||||||||||||.||||||
Sbjct 955 GTTGCTGGCCTTGTTGTCCTTGGAGCTGTGGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAGAG 1028
Query 1008 CTCAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAG------CAGTG---------------------ACA 1054
||||||||||||..|||||||||||||||||||||| || ||||| |||
Sbjct 1029 CTCAGATAGAAACAGAGGGAGCTACTCTCAGGCTGC-AGCCTACTCAGTGGTCAGCGGAAACTTGATGATAACA 1101
Query 1055 --GTGCCCA------------------GGGCTCT------GAT-------GTGTCTC-----TCACAG---CTT 1087
|||..|| |.||||| ||| .||.||| |||||| |||
Sbjct 1102 TGGTGGTCAAGCTTATTTCTCCTGGGGGTGCTCTTCCAAGGATATTTGGGCTGCCTCCGGAGTCACAGTGTCTT 1175
Query 1088 ------------GTAAAGTG------------------------------------------------------ 1095
|.|||||.
Sbjct 1176 GGGCCGCCGGAAGGAAAGTTGACTCATACTGGTGTCCAGTGAAGAAACCCAGGCGCATAAGAGGGACAGTTGGA 1249
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1250 TCTCAGGGAGGACTGTCTTCTTCTCACCTCCCCGGACGATGCTTCTTGACACAGGAAAGAGGATGTGCTGCTAG 1323
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1324 GGTCATCATGTCCTGGTTTATTGTGTTGTCAGTAGAATGAAATCAAAATACATACTTCATAAATAATAAAATAA 1397
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1398 CCCATAATAAGTAAACATTTACAATTTACTCACACCATTGAGGTTTCCTCCAGGTGTGAGCACAGCTGCAGACA 1471
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1472 CACCTTGTCGCTTCAGTCAGGACACAGGACAGAGTAAAATGGGAAGAAACCACAGTCACTGCAGAAAGGGCCCC 1545
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1546 CATGGAAGAGGCCTGGCAGGGAGGCCAGCTGCCCCAGGGCCACCATATTTAGAGATGACTTCCCCTTTCTAGGC 1619
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1620 AGGACTGGGATTTTAAAATTCTTTTTGTATTCATAGTTGTTCTGAAATTGCAGGATGATGAGACCCAGCACTGG 1693
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1694 TGAGTTATACTGTCTCTTTCTTCCCTATTAAATTCTGTGCCAAACAGCACCTTCATATATTTATCTCCTCTTCC 1767
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1768 TGGAGAGAATAAAAACAATGGAAAAATTGAACCATACAAACATACTTTAAATATGTGCTGTCAGAAGTAGCTAC 1841
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1842 TAAAGGATTAATTCCACCAAAGTGAGGGAAGGTTTGAAAAGAAAAACATTGTATACCCATATTCAAAGCAGCAT 1915
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1916 TATTCACGATAGCCAAGACAACACACACCAACACATGAATGAAGAAAATGTGGTATATATCGACAACGGAATAT 1989
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1990 CATTCAGCCTTAAGAAGGAAACCTGGTCACAGGCTGCAACAGGGATAAACCTGAAGGACACTGCTAAGTAAAAT 2063
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2064 AAGCCAATCACAAAGAAAACCCAATACTGCACATTTCCATTTATATGAGGTGTCTAAACTGAAAGTAGACTAAT 2137
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2138 GGCTGCTAGGGGCTCGGTGAGGGGGATGGATGAATGTTTGTTCAATGGGCATAGAGTTTCAGTGTTGCAAGATG 2211
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2212 AAAAGTTCTAGAGATCTGTTGCACAACTATGTATTTACAGTTAATACTGTACTACTGTATACTTTAAAATAGTT 2285
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2286 AAGATACCAAATTTTACATAATGTAGTTTTTGGCCCAAGGAAAAGACTAATTAGCCCTGTTACTAATTTAGGGA 2359
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2360 AAAAGTACATGAATTCATTAAAAATATATTAGTATGCGCTTACCTTAGATACAGAAAACTATGAGACAAAAAGA 2433
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2434 GAGATCCCTGCTACCCCAGCTATCACCCATGAACCAGGAAAATCAGCACCTCCTGAAACTAGACAGAAAGGCTC 2507
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2508 ACAGGCCCAGCCTTGACATGTTGAATCAGTCTGCATTTTGGCTGGAACCCAGGTGGCTCCACTGCATGTAAAGC 2581
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2582 ACCTTCCCAGATAGTGATGGAGGGAGATCCTAGGACAGTGACTCTGCTCCACGGGGAGAAGCCTCCAGTCCAGA 2655
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2656 TGGGAGCAGCCAGAAGGGCCCAGGAGGGACATTTCCAAGAAGATAAAATTAACAGAATGTCCAAAGTGTCCAAC 2729
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2730 GTCTTGAAAGAATCATACAAACAAAAGAGATATCAAACTTAAATTAATGAGAGTTAATAAAATAAACAAAAACA 2803
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2804 AATGCAAGTATTAACTCCAAGAAGAACCAATGTTGTACAGGCAGTGAAAAGTAGTCCAGTTGACATATGAGAGG 2877
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2878 ATTAGTCATGGTAAAAGAAACAAGAGATGGCTGAACTAAACATAATCACTATATAAATATACTGGGAAGAGTGA 2951
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2952 AAGAGAACAAGTACTCTTAACTGTTGCATCCACCATTGCGCTGTGCAACAATGGGTGCATCTGAAAAAAATCAA 3025
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 3026 GCAATAATAATAAAGAAATGGTAGTTAGAGATACAGAAGTAAAGTCAAAAGAATCAGCTAAAAAACTTGAAAGT 3099
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 3100 GGTTGGCCCCTAGAAAGGCAGAAATTGAGAAGAGGCAGAGAGGACTCTCATTTTTCTCAAGAGATTCTGCACAA 3173
Query 1096 -------------------------------------------------------------- 1095
Sbjct 3174 ATATTTGACTCTTTCAATTGTGCACAATTATAAATTTGATTAAAATAAAAACAAAAGCTTCA 3235
