Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15515
- Subject:
- NM_001252282.1
- Aligned Length:
- 3120
- Identities:
- 1162
- Gaps:
- 1845
Alignment
Query 1 ATGTTTCATTTAAGGACTTGTGCTGCTAAGTTGAGGCCATTGACGGCTTCCCAGACTGTTAAGACATTTTCACA 74
||||||||||||||||||||||||||||||||.|||||||||||.||.||||||||||||||||||||||||||
Sbjct 1 ATGTTTCATTTAAGGACTTGTGCTGCTAAGTTAAGGCCATTGACAGCCTCCCAGACTGTTAAGACATTTTCACA 74
Query 75 AAACAGACCAGCAGCAGCTAGGACATTTCAACAGATTCGGTGCTATTCTGCACCTGTTGCTGCTGAGCCCTTTC 148
|||||.||||||||||..||||||.||||||||||||||||||||||||||||||||.||||||||.||.||||
Sbjct 75 AAACAAACCAGCAGCAATTAGGACGTTTCAACAGATTCGGTGCTATTCTGCACCTGTAGCTGCTGAACCATTTC 148
Query 149 TCAGTGGGACTAGTTCGAACTATGTGGAGGAGATGTACTGTGCTTGGCTGGAAAACCCCAAAAGTGTACATAAG 222
|.|||||||||||||||||||||||||||||.|||||||||||.|||.||||.||.||||||||||||||||||
Sbjct 149 TTAGTGGGACTAGTTCGAACTATGTGGAGGAAATGTACTGTGCCTGGTTGGAGAATCCCAAAAGTGTACATAAG 222
Query 223 TCATGGGACATTTTTTTTCGCAACACGAATGCCGGAGCCCCACCGGGCACTGCCTACCAGAGTCCCCTTCCCCT 296
|||||||||||||||||.||.|||||.|||||.|||||||||||||||||||||||||||||.||||||.||||
Sbjct 223 TCATGGGACATTTTTTTCCGAAACACCAATGCTGGAGCCCCACCGGGCACTGCCTACCAGAGCCCCCTTTCCCT 296
Query 297 GAGCCGAGGCTCCCTGGCTGCTGTGGCCCATGCACAGTCCCTGGTAGAAGCACAGCCCAACGTGGACAAGCTCG 370
|||.|||.|||||||||||.|..||||||||||||||||||||||.||||||||.||.|||||.|||||.||||
Sbjct 297 GAGTCGAAGCTCCCTGGCTACCATGGCCCATGCACAGTCCCTGGTGGAAGCACAACCTAACGTCGACAAACTCG 370
Query 371 TGGAGGACCACCTGGCAGTGCAGTCGCTCATCAGGGCATATCAGATACGAGGGCACCATGTAGCACAGCTGGAC 444
|||||||||||.||||.||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGGAGGACCACTTGGCGGTGCAGTCTCTCATCAGGGCATATCAGATACGAGGGCACCATGTAGCACAGCTGGAC 444
Query 445 CCCCTGGGGATTTTGGATGCTGATCTGGACTCCTCCGTGCCCGCTGACATTATCTCATCCACAGACAAACTT-- 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCCCTGGGGATTTTGGATGCTGATCTGGACTCCTCCGTGCCCGCTGACATTATCTCATCCACAGACAAACTTGA 518
Query 517 -------------------------------------------GGGTTCTATGGCCTGGATGAGTCTGACCTCG 547
||||||||||||||..|.|||||||||||.|
Sbjct 519 TCTTGCAGTTTTCAAGGAACGACTTCGAATGCTAACAGTAGGAGGGTTCTATGGCCTACACGAGTCTGACCTTG 592
Query 548 ACAAGGTCTTCCACTTGCCCACCACCACTTTCATCGGGGGACAGGAATCAGCACTTCCTCTGCGGGAGATCATC 621
||||||||||||||||.|||||||||||||||||||||||||||||..|||||||||||||.||||||||||||
Sbjct 593 ACAAGGTCTTCCACTTACCCACCACCACTTTCATCGGGGGACAGGAGCCAGCACTTCCTCTTCGGGAGATCATC 666
Query 622 CGTCGGCTGGAGATGGCCTACTGCCAGCATATTGGGGTGGAGTTCATGTTCATCAATGACCTGGAGCAGTGCCA 695
|||||||||||||||||||||||||||||.|||||.|||||||||||||||||.|||||..||||.||.|||||
Sbjct 667 CGTCGGCTGGAGATGGCCTACTGCCAGCACATTGGTGTGGAGTTCATGTTCATTAATGATTTGGAACAATGCCA 740
Query 696 GTGGATCCGGCAGAAGTTTGAGACCCCTGGGATCATGCAGTTCACAAATGAGGAGAAACGGACCCTGCTGGCCA 769
|||||||||.||||||||||||||||||||.||||||||||||||.|||||||||||.||||||.|||||||||
Sbjct 741 GTGGATCCGACAGAAGTTTGAGACCCCTGGAATCATGCAGTTCACCAATGAGGAGAAGCGGACCTTGCTGGCCA 814
Query 770 GGCTTGTGCGGTCCACCAGGTTTGAGGAGTTCCTACAGCGGAAGTGGTCCTCTGAGAAGCGCTTTGGTCTAGAA 843
|||||||.||.|||||||||||||||||||||||||||||.|||||||||||.||||||||.||||||||.|||
Sbjct 815 GGCTTGTACGATCCACCAGGTTTGAGGAGTTCCTACAGCGAAAGTGGTCCTCGGAGAAGCGTTTTGGTCTGGAA 888
Query 844 GGCTGCGAGGTACTGATCCCTGCCCTCAAGACCATCATTGACAAGTCTAGTGAGAATGGCGTGGACTACGTGAT 917
|||||.|||||.||||||||||||||||||||.||||||||.|.|||.||||..|||||.||||||||.|||||
Sbjct 889 GGCTGTGAGGTGCTGATCCCTGCCCTCAAGACAATCATTGATATGTCAAGTGCAAATGGAGTGGACTATGTGAT 962
Query 918 CATGGGCATGCCACACAGAGGGCGGCTGAACGTGCTTGCAAATGTCATCAGGAAGGAGCTGGAACAGATCTTCT 991
||||||.||||||||||||||.|||||||||||||||||||||||||||||||||||||||||.||.||.||||
Sbjct 963 CATGGGGATGCCACACAGAGGACGGCTGAACGTGCTTGCAAATGTCATCAGGAAGGAGCTGGAGCAAATATTCT 1036
Query 992 GTCAATTCGATTCAAAGCTGGAGGCAGCTGATGAGGGCTCCGGAGATGTGAAGTACCACCTGGGCATGTATCAC 1065
||||.||.||.||||||||||||||||||||||||||.||.||.||..||||||||||||||||||||||||||
Sbjct 1037 GTCAGTTTGACTCAAAGCTGGAGGCAGCTGATGAGGGTTCTGGGGACATGAAGTACCACCTGGGCATGTATCAC 1110
Query 1066 CGCAGGATCAATCGTGTCACCGACAGGAACATTACCTTGTCCTTGGTGGCCAACCCTTCCCACCTTGAGGCCGC 1139
|||||||||||.|||||.||||||||.|||||.||.||||||||||||||.|||||||||||.||.|||||.||
Sbjct 1111 CGCAGGATCAACCGTGTGACCGACAGAAACATCACTTTGTCCTTGGTGGCTAACCCTTCCCATCTAGAGGCTGC 1184
Query 1140 TGACCCCGTGGTGATGGGCAAGACCAAAGCCGAACAGTTTTACTGTGGCGACACTGAAGGGAAAAAGGTAAGGC 1213
||||||.||.||||||||.|||||||||||.||||||||.||||||||.||||||||||||||||||||.|.|.
Sbjct 1185 TGACCCTGTCGTGATGGGAAAGACCAAAGCTGAACAGTTCTACTGTGGAGACACTGAAGGGAAAAAGGTGATGT 1258
Query 1214 C----------CAGAGAGAGGC-----GTGCAAGGCAG---ATCGTCA----AGGCC--CCATGTTCCAGCATG 1263
| ||..|.||.|| .|||..|.||| ||||| | ||.|| ||||.| ||||
Sbjct 1259 CTATCCTGCTGCATGGGGATGCTGCTTTTGCTGGCCAGGGCATCGT-ATATGAGACCTTCCATCT--CAGC--- 1326
Query 1264 GAGTT-CCG--CT-CAC---------------------------CAACA------------------------- 1281
||.|| ||| || ||| |||||
Sbjct 1327 GACTTGCCGTCCTACACAACCCATGGCACTGTTCATGTGGTTGTCAACAACCAGATTGGCTTCACCACAGACCC 1400
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 1401 TCGGATGGCCCGCTCCTCTCCCTACCCCACTGATGTGGCCCGAGTGGTGAATGCCCCCATTTTCCATGTCAACT 1474
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 1475 CAGATGACCCTGAAGCTGTCATGTATGTATGCAAGGTGGCAGCTGAGTGGAGAAACACCTTCCACAAGGATGTT 1548
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 1549 GTAGTTGATCTGGTGTGTTATCGACGAAATGGCCACAATGAGATGGACGAACCTATGTTTACACAGCCACTCAT 1622
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 1623 GTACAAGCAGATCCGCAAGCAGAAGCCTGTACTGCAGAAGTATGCAGAATTGCTAGTCTCCCAGGGTGTCGTCA 1696
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 1697 ATCAGCCTGAGTACGAGGAGGAAATCTCCAAGTATGATAAGATCTGTGAGGAAGCATTTACCAGATCCAAAGAT 1770
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 1771 GAGAAGATCTTGCACATCAAGCACTGGCTGGATTCCCCCTGGCCTGGCTTTTTCACCCTGGATGGACAGCCCAG 1844
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 1845 GAGCATGACCTGCCCCTCCACTGGCCTGGAGGAGGATGTCTTGTTCCACATTGGAAAGGTGGCCAGCTCTGTAC 1918
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 1919 CTGTGGAGAACTTTACTATCCATGGAGGGCTGAGCCGGATCTTGAAGACCCGCAGAGAGCTTGTGACGAACCGG 1992
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 1993 ACTGTGGACTGGGCCCTGGCAGAGTACATGGCATTTGGCTCACTGCTGAAGGAAGGCATCCATGTGCGGCTGAG 2066
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2067 TGGCCAGGATGTGGAGCGGGGCACCTTCAGCCATCGCCACCATGTGCTCCATGATCAGAATGTTGACAAAAGAA 2140
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2141 CCTGCATCCCCATGAACCACCTTTGGCCAAATCAGGCCCCTTACACTGTATGCAACAGCTCGCTGTCTGAGTAC 2214
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2215 GGTGTCCTGGGCTTTGAGCTGGGCTTTGCCATGGCTAGCCCTAATGCTCTGGTTCTCTGGGAGGCCCAGTTTGG 2288
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2289 TGACTTCAACAACATGGCACAGTGCATCATTGACCAGTTCATCTGCCCAGGACAGGCAAAGTGGGTGCGGCAGA 2362
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2363 ATGGCATTGTGCTCCTGCTGCCTCATGGCATGGAAGGCATGGGTCCCGAGCATTCCTCTGCCCGCCCAGAGCGG 2436
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2437 TTTCTGCAGATGTGCAATGATGACCCAGATGTCCTGCCTGACCTGCAGGAAGAAAACTTTGACATCAATCAGCT 2510
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2511 CTATGACTGCAACTGGATTGTTGTCAACTGTTCCACCCCTGGCAACTTCTTCCATGTGCTGCGACGACAGATCT 2584
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2585 TGCTGCCCTTCCGGAAGCCGTTAATCGTCTTCACTCCCAAATCCCTCCTGCGCCACCCTGAGGCAAGAACTAGC 2658
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2659 TTTGACGAGATGCTGCCAGGAACGCACTTCCAGCGTGTGATCCCAGAAAATGGACCTGCAGCTCAGGACCCACA 2732
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2733 CAAAGTCAAGAGACTTCTCTTCTGCACTGGGAAGGTGTACTATGACCTCACCCGAGAGCGCAAAGCCAGGAACA 2806
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2807 TGGAGGAGGAGGTGGCTATTACAAGGATTGAGCAGCTATCACCATTCCCCTTTGACCTCCTGCTGAAAGAGGCA 2880
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2881 CAGAAGTATCCCAATGCTGAGCTGGCCTGGTGCCAGGAAGAGCACAAGAACCAAGGCTACTATGACTATGTCAA 2954
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2955 GCCAAGACTTCGTACCACCATTGACCGTGCTAAGCCTGTCTGGTATGCTGGCCGAGACCCGGCAGCTGCTCCAG 3028
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 3029 CCACTGGCAACAAGAAAACACACCTGACAGAGCTGCAGCGCTTTCTGGACACAGCCTTTGACCTGGACGCATTC 3102
Query 1282 ------------ 1281
Sbjct 3103 AAGAAATTCTCT 3114
