Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_15561
• Subject: NM_001145302.3
• Aligned Length: 1409
• Identities: 1032
• Gaps: 352

Alignment

Query    1  ATGTACGAGAGTGTAGAAGTGGGGGGTCCCACCCCTAATCCCTTCCTAGTGGTGGATTTTTATAACCAGAACCG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GGCCTGTTTGCTCCCAGAGAAGGGGCTCCCCGCCCCGGGTCCGTACTCCACCCCGCTCCGGACTCCGCTTTGGA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  ATGGCTCAAACCACTCCATTGAGACCCAG-AGCAGCAGTTCTGAAGAGATAGTGCCCAGCCCTCCCTCGCCAC-  220
            ||||                     |||| |.||||||.||          .||||           ||.||| 
Sbjct    1  ATGG---------------------CCAGCAACAGCAGCTC----------CTGCC-----------CGACACC  32

Query  221  ----------CCCCTC------TACCC--CGCAT--CTACAAGCCTTGCTTTGTCTGTCAGGACAAGTCCTCAG  274
                      |.||||      |||||  .||.|  ||||  ||||| ||   |||           |||    
Sbjct   33  TGGGGGCGGGCACCTCAATGGGTACCCGGTGCCTCCCTAC--GCCTT-CT---TCT-----------TCC----  85

Query  275  GCTACCACTATGGGGTCAGCGCCTGTGAGGGCT------GCAAGG-GCT--------TCTTCCGCCGCAGCATC  333
                ||.|||||          |||.|.||.||      ||.||| |||        |||.|.||..||||.||
Sbjct   86  ----CCCCTATG----------CTGGGTGGACTCTCCCCGCCAGGCGCTCTGACCACTCTCCAGCACCAGCTTC  145

Query  334  CAGAAGAACATGGTGTACACGTGTCACCGGGACA-AGAACTGCATCATCAACAAGGTGACCCGGAACCGCTGCC  406
            |||      .|.||               |||.| ||.||..|||                     ||.|.|||
Sbjct  146  CAG------TTAGT---------------GGATATAGCACACCAT---------------------CCCCAGCC  177

Query  407  AGTACTGCCGACTGCAGAAGTGCTTTGAAGTGGGCATGTCCAAGGAGTCTGTGAGAAACGACCGAAACAAGAAG  480
            |                                               ||||||||||||||||||||||||||
Sbjct  178  A-----------------------------------------------CTGTGAGAAACGACCGAAACAAGAAG  204

Query  481  AAGAAGGAGGTGCCCAAGCCCGAGTGCTCTGAGAGCTACACGCTGACGCCGGAGGTGGGGGAGCTCATTGAGAA  554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  205  AAGAAGGAGGTGCCCAAGCCCGAGTGCTCTGAGAGCTACACGCTGACGCCGGAGGTGGGGGAGCTCATTGAGAA  278

Query  555  GGTGCGCAAAGCGCACCAGGAAACCTTCCCTGCCCTCTGCCAGCTGGGCAAATACACTACGAACAACAGCTCAG  628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  279  GGTGCGCAAAGCGCACCAGGAAACCTTCCCTGCCCTCTGCCAGCTGGGCAAATACACTACGAACAACAGCTCAG  352

Query  629  AACAACGTGTCTCTCTGGACATTGACCTCTGGGACAAGTTCAGTGAACTCTCCACCAAGTGCATCATTAAGACT  702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  353  AACAACGTGTCTCTCTGGACATTGACCTCTGGGACAAGTTCAGTGAACTCTCCACCAAGTGCATCATTAAGACT  426

Query  703  GTGGAGTTCGCCAAGCAGCTGCCCGGCTTCACCACCCTCACCATCGCCGACCAGATCACCCTCCTCAAGGCTGC  776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  427  GTGGAGTTCGCCAAGCAGCTGCCCGGCTTCACCACCCTCACCATCGCCGACCAGATCACCCTCCTCAAGGCTGC  500

Query  777  CTGCCTGGACATCCTGATCCTGCGGATCTGCACGCGGTACACGCCCGAGCAGGACACCATGACCTTCTCGGACG  850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  501  CTGCCTGGACATCCTGATCCTGCGGATCTGCACGCGGTACACGCCCGAGCAGGACACCATGACCTTCTCGGACG  574

Query  851  GGCTGACCCTGAACCGGACCCAGATGCACAACGCTGGCTTCGGCCCCCTCACCGACCTGGTCTTTGCCTTCGCC  924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  575  GGCTGACCCTGAACCGGACCCAGATGCACAACGCTGGCTTCGGCCCCCTCACCGACCTGGTCTTTGCCTTCGCC  648

Query  925  AACCAGCTGCTGCCCCTGGAGATGGATGATGCGGAGACGGGGCTGCTCAGCGCCATCTGCCTCATCTGCGGAGA  998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  649  AACCAGCTGCTGCCCCTGGAGATGGATGATGCGGAGACGGGGCTGCTCAGCGCCATCTGCCTCATCTGCGGAGA  722

Query  999  CCGCCAGGACCTGGAGCAGCCGGACCGGGTGGACATGCTGCAGGAGCCGCTGCTGGAGGCGCTAAAGGTCTACG  1072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  723  CCGCCAGGACCTGGAGCAGCCGGACCGGGTGGACATGCTGCAGGAGCCGCTGCTGGAGGCGCTAAAGGTCTACG  796

Query 1073  TGCGGAAGCGGAGGCCCAGCCGCCCCCACATGTTCCCCAAGATGCTAATGAAGATTACTGACCTGCGAAGCATC  1146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  797  TGCGGAAGCGGAGGCCCAGCCGCCCCCACATGTTCCCCAAGATGCTAATGAAGATTACTGACCTGCGAAGCATC  870

Query 1147  AGCGCCAAGGGGGCTGAGCGGGTGATCACGCTGAAGATGGAGATCCCGGGCTCCATGCCGCCTCTCATCCAGGA  1220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  871  AGCGCCAAGGGGGCTGAGCGGGTGATCACGCTGAAGATGGAGATCCCGGGCTCCATGCCGCCTCTCATCCAGGA  944

Query 1221  AATGTTGGAGAACTCAGAGGGCCTGGACACTCTGAGCGGACAGCCGGGGGGTGGGGGGCGGGACGGGGGTGGCC  1294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  945  AATGTTGGAGAACTCAGAGGGCCTGGACACTCTGAGCGGACAGCCGGGGGGTGGGGGGCGGGACGGGGGTGGCC  1018

Query 1295  TGGCCCCCCCGCCAGGCAGCTGTAGCCCCAGCCTCAGCCCCAGCTCCAACAGAAGCAGCCCGGCCACCCACTCC  1368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019  TGGCCCCCCCGCCAGGCAGCTGTAGCCCCAGCCTCAGCCCCAGCTCCAACAGAAGCAGCCCGGCCACCCACTCC  1092

Query 1369  CCG  1371
            |||
Sbjct 1093  CCG  1095