Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_15588
Subject:
NM_001252316.1
Aligned Length:
1515
Identities:
1324
Gaps:
15

Alignment

Query    1  ATGCTGTACTTCTCTTTGTTTTGGGCGGCTCGGCCTCTGCAGAGATGTGGGCAGCTGGTCAGGATGGCCATTCG  74
            |||.|.|.||||||||||.||.||.|..||||         |||||||||.|||||||||.|.|||||....||
Sbjct    1  ATGGTATCCTTCTCTTTGCTTCGGACCACTCG---------GAGATGTGGTCAGCTGGTCTGCATGGCTGCCCG  65

Query   75  GGCTCAGCACAGCAACGCAGCCCAGACTCAGACTGGGGAAGCAAACAGG-GGCTGGACAGGCCAGGAGAGCCTG  147
            |||.|||||||||||.|..||||||||.|||.|||||||||| |.|.|| ||.|||||.|||||||||||..|.
Sbjct   66  GGCCCAGCACAGCAAGGTGGCCCAGACGCAGGCTGGGGAAGC-AGCTGGAGGTTGGACGGGCCAGGAGAGTTTA  138

Query  148  TCGGACAGTGATCCTGAGATGTGGGAGTTGCTGCAGAGGGAGAAGGACAGGCAGTGTCGTGGCCTGGAGCTCAT  221
            ||.||||||||.|||||||||||||||.|.||||||||||||||||||||.||||||||.||||||||||||||
Sbjct  139  TCAGACAGTGACCCTGAGATGTGGGAGCTTCTGCAGAGGGAGAAGGACAGACAGTGTCGCGGCCTGGAGCTCAT  212

Query  222  TGCCTCAGAGAACTTCTGCAGCCGAGCTGCGCTGGAGGCCCTGGGGTCCTGTCTGAACAACAAGTACTCGGAGG  295
            .|||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct  213  CGCCTCAGAGAACTTCTGCAGCCGAGCTGCGCTGGAGGCCCTGGGGTCCTGTCTCAACAACAAGTACTCGGAGG  286

Query  296  GTTATCCTGGCAAGAGATACTATGGGGGAGCAGAGGTGGTGGATGAAATTGAGCTGCTGTGCCAGCGCCGGGCC  369
            ||||.|||||||||||||||||.||.|||||.||.||||||||.||.||.||||||||.|||||||||||||||
Sbjct  287  GTTACCCTGGCAAGAGATACTACGGAGGAGCGGAAGTGGTGGACGAGATCGAGCTGCTCTGCCAGCGCCGGGCC  360

Query  370  TTGGAAGCCTTTGACCTGGATCCTGCACAGTGGGGAGTCAATGTCCAGCCCTACTCCGGGTCCCCAGCCAACCT  443
            |||||||||||||||||||||||.||||||||||||||||||||.|||||.|||||.||||||||||||||.||
Sbjct  361  TTGGAAGCCTTTGACCTGGATCCGGCACAGTGGGGAGTCAATGTGCAGCCATACTCAGGGTCCCCAGCCAATCT  434

Query  444  GGCCGTCTACACAGCCCTTCTGCAACCTCACGACCGGATCATGGGGCTGGACCTGCCCGATGGGGGCCATCTCA  517
            |||.|.|||.||.|||||||||||.|||||.||.||.|||||||||.|||||||||||||||||||||||||||
Sbjct  435  GGCTGCCTATACGGCCCTTCTGCAGCCTCATGATCGAATCATGGGGTTGGACCTGCCCGATGGGGGCCATCTCA  508

Query  518  CCCACGGCTACATGTCTGACGTCAAGCGGATATCAGCCACGTCCATCTTCTTCGAGTCTATGCCCTATAAGCTC  591
            ||||.||||||||||||||.|||||||||||.||.|||||.|||||.|||||||||||||||||||||||||||
Sbjct  509  CCCATGGCTACATGTCTGATGTCAAGCGGATCTCCGCCACATCCATTTTCTTCGAGTCTATGCCCTATAAGCTC  582

Query  592  AACCCCAAAACTGGCCTCATTGACTACAACCAGCTGGCACTGACTGCTCGACTTTTCCGGCCACGGCTCATCAT  665
            ||.|||.|||||||||||||.||||||.||||||||||.|||||.|||||.||||||||.||.|||||||||||
Sbjct  583  AATCCCCAAACTGGCCTCATCGACTACGACCAGCTGGCGCTGACCGCTCGGCTTTTCCGACCGCGGCTCATCAT  656

Query  666  AGCTGGCACCAGCGCCTATGCTCGCCTCATTGACTACGCCCGCATGAGAGAGGTGTGTGATGAAGTCAAAGCAC  739
            |||||||||.||.||||||||.||||||||||||||.||.||||||||||||||.||||||||.||||..||||
Sbjct  657  AGCTGGCACGAGTGCCTATGCCCGCCTCATTGACTATGCACGCATGAGAGAGGTCTGTGATGAGGTCAGGGCAC  730

Query  740  ACCTGCTGGCAGACATGGCCCACATCAGTGGCCTGGTGGCTGCCAAGGTGATTCCCTCGCCTTTCAAGCACGCG  813
            ||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||||||.|||||
Sbjct  731  ACCTGCTGGCAGACATGGCCCACATCAGTGGCCTGGTGGCTGCCAAGGTGATCCCCTCCCCTTTCAAGTACGCG  804

Query  814  GACATCGTCACCACCACTACTCACAAGACTCTTCGAGGGGCCAGGTCAGGGCTCATCTTCTACCGGAAAGGGGT  887
            ||..|.||.||||||||.|||||||||||.||.|||||||||||||||||||||||||||||||||||.||.||
Sbjct  805  GATGTTGTTACCACCACCACTCACAAGACACTGCGAGGGGCCAGGTCAGGGCTCATCTTCTACCGGAAGGGAGT  878

Query  888  --GAAGGCTGTGGACCCCAAGACTGGCCGGGAGATCCCTTACACATTTGAGGACCGAATCAACTTTGCCGTGTT  959
              |||  |.||.|||||||||||||||...|||||||||||.||.||||||||||||||||||||.||.|||||
Sbjct  879  ACGAA--CCGTAGACCCCAAGACTGGCAAAGAGATCCCTTATACCTTTGAGGACCGAATCAACTTCGCTGTGTT  950

Query  960  CCCATCCCTGCAGGGGGGCCCCCACAATCATGCCATTGCTGCAGTAGCTGTGGCCCTAAAGCAGGCCTGCACCC  1033
            |||||||||.|||||.|||||||||||.||.|||||||||||||||||.|||||.||.||||||||||||||||
Sbjct  951  CCCATCCCTACAGGGTGGCCCCCACAACCACGCCATTGCTGCAGTAGCCGTGGCTCTCAAGCAGGCCTGCACCC  1024

Query 1034  CCATGTTCCGGGAGTACTCCCTGCAGGTTCTGAAGAATGCTCGGGCCATGGCAGATGCCCTGCTAGAGCGAGGC  1107
            |.||||||||.|||||||||.|.||.||.||||.|||.||.|.|||||||||.|||||||||||..|||||||.
Sbjct 1025  CTATGTTCCGCGAGTACTCCTTACAAGTGCTGAGGAACGCCCAGGCCATGGCTGATGCCCTGCTCAAGCGAGGA  1098

Query 1108  TACTCACTGGTATCAGGTGGTACTGACAACCACCTGGTGCTGGTGGACCTGCGGCCCAAGGGCCTGGATGGAGC  1181
            |||||.|||||.||.|||||.|||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099  TACTCGCTGGTGTCTGGTGGCACTGACACCCACCTGGTGCTGGTGGACCTGCGGCCCAAGGGCCTGGATGGAGC  1172

Query 1182  TCGGGCTGAGCGGGTGCTAGAGCTTGTATCCATCACTGCCAACAAGAACACCTGTCCTGGAGACCGAAGTGCCA  1255
            .||.||.||.||.|||.|.||.||.||.||||||||.|||||||||||||||||||||||||||||.||.||||
Sbjct 1173  CCGAGCCGAACGCGTGTTGGAACTCGTCTCCATCACAGCCAACAAGAACACCTGTCCTGGAGACCGGAGCGCCA  1246

Query 1256  TCACACCGGGCGGCCTGCGGCTTGGGGCCCCAGCCTTAACTTCTCGACAGTTCCGTGAGGATGACTTCCGGAGA  1329
            |.||.|||||.|||.||.|||||||||||||.||.||.||.|||||.||||||||||||||.||||||||.|||
Sbjct 1247  TTACTCCGGGGGGCTTGAGGCTTGGGGCCCCCGCGTTGACCTCTCGCCAGTTCCGTGAGGACGACTTCCGTAGA  1320

Query 1330  GTTGTGGACTTTATAGATGAAGGGGTCAACATTGGCTTAGAGGTGAAGAGCAAGACTGCCAAGCTCCAGGATTT  1403
            ||.||.||.|||||.|||||.||.||||||||||||||.|||||||||.|||||||||||||||||||||||||
Sbjct 1321  GTCGTCGATTTTATCGATGAGGGAGTCAACATTGGCTTGGAGGTGAAGCGCAAGACTGCCAAGCTCCAGGATTT  1394

Query 1404  CAAATCCTTCCTGCTTAAGGACTCAGAAACAAGTCAGCGTCTGGCCAACCTCAGGCAACGGGTGGAGCAGTTTG  1477
            |||||||||||||||.||.|||.||||.|||||.||||||.|||||||||||.||||||.||||||.|||||||
Sbjct 1395  CAAATCCTTCCTGCTCAAAGACCCAGAGACAAGCCAGCGTTTGGCCAACCTCCGGCAACAGGTGGAACAGTTTG  1468

Query 1478  CCAGGGCCTTCCCCATGCCTGGTTTTGATGAGCAT  1512
            ||||||.|||||||||||||||.||||||||.|.|
Sbjct 1469  CCAGGGGCTTCCCCATGCCTGGATTTGATGAACGT  1503

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