Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15743
- Subject:
- NM_001040106.2
- Aligned Length:
- 2881
- Identities:
- 1292
- Gaps:
- 1462
Alignment
Query 1 ATGAAGAAGTTTTTCGACTCCCGGCGAGAGCAGGGCGGCTCTGGCCTGGGCTCCGGCTCCAGCGGAGGAGGGGG 74
|||||||||||||||||||||.||||.||||||||..|||||||||||||.||.||||||||||||||||||||
Sbjct 1 ATGAAGAAGTTTTTCGACTCCAGGCGGGAGCAGGGGAGCTCTGGCCTGGGTTCAGGCTCCAGCGGAGGAGGGGG 74
Query 75 CAGCACCTCGGGCCTGGGCAGTGGCTACATCGGAAGAGTCTTCGGCATCGGGCGACAGCAGGTCACAGTGGACG 148
|||||.|||.||||||||||||||.|||||||||||.|||||||||||||||.|.|||||||||||.|||||||
Sbjct 75 CAGCAGCTCAGGCCTGGGCAGTGGTTACATCGGAAGGGTCTTCGGCATCGGGAGGCAGCAGGTCACCGTGGACG 148
Query 149 AGGTGTTGGCGGAAGGTGGATTTGCTATTGTATTTCTGGTGAGGACAAGCAATGGGATGAAATGTGCCTTGAAA 222
||||||||||||||||||||||.|||.||||.|||||||||||.||||||||||||.|||||||||||||||||
Sbjct 149 AGGTGTTGGCGGAAGGTGGATTCGCTCTTGTCTTTCTGGTGAGAACAAGCAATGGGGTGAAATGTGCCTTGAAA 222
Query 223 CGCATGTTTGTCAACAATGAGCATGATCTCCAGGTGTGCAAGAGAGAAATCCAGATAATGAGGGATCTTTCAGG 296
||.|||||||||||||||||.|||||.|||||||||||||||||.||.||||||||.|||||.||.||.|||||
Sbjct 223 CGTATGTTTGTCAACAATGAACATGACCTCCAGGTGTGCAAGAGGGAGATCCAGATCATGAGAGACCTATCAGG 296
Query 297 GCACAAGAATATTGTGGGTTACATTGATTCTAGTATCAACAACGTGAGTAGCGGTGATGTATGGGAAGTGCTCA 370
|||||||||.||||||||.|||||||||||||||||||||||.|||||.|||||.||.||.||||||||.||||
Sbjct 297 GCACAAGAACATTGTGGGCTACATTGATTCTAGTATCAACAATGTGAGCAGCGGCGACGTCTGGGAAGTTCTCA 370
Query 371 TTCTGATGGACTTTTGTAGAGGTGGCCAGGTGGTAAACCTGATGAACCAGCGCCTGCAAACAGGCTTTACAGAG 444
||||.||||||||.||.|||||.|||||||||||||||||||||||||||||.||.||.||||||||.||||||
Sbjct 371 TTCTCATGGACTTCTGCAGAGGAGGCCAGGTGGTAAACCTGATGAACCAGCGTCTCCAGACAGGCTTCACAGAG 444
Query 445 AATGAAGTGCTCCAGATATTTTGTGATACCTGTGAAGCTGTTGCCCGCCTGCATCAGTGCAAAACTCCTATTAT 518
|||||||||||.||||||||.|||||.||||||||||||||.||||||||||||||||||||||||||.|||||
Sbjct 445 AATGAAGTGCTGCAGATATTCTGTGACACCTGTGAAGCTGTGGCCCGCCTGCATCAGTGCAAAACTCCCATTAT 518
Query 519 CCACCGGGACCTGAAGGTTGAAAACATCCTCTTGCATGACCGAGGCCACTATGTCCTGTGTGACTTTGGAAGCG 592
||||||||||||||||||||||||.||||||||||||||||||||||||||||||.||||||||||||||||.|
Sbjct 519 CCACCGGGACCTGAAGGTTGAAAATATCCTCTTGCATGACCGAGGCCACTATGTCTTGTGTGACTTTGGAAGTG 592
Query 593 CCACCAACAAATTCCAGAATCCACAAACTGAGGGAGTCAATGCAGTAGAAGATGAGATTAAGAAATACACAACG 666
|||||||||||||||||||||||||..|.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CCACCAACAAATTCCAGAATCCACAGGCCGAGGGAGTCAATGCAGTAGAAGATGAGATTAAGAAATACACAACG 666
Query 667 CTGTCCTATCGAGCACCAGAAATGGTCAACCTGTACAGTGGCAAAATCATCACTACGAAGGCAGACATTTGGGC 740
||.|||||||||||.|||||||||||||||.||||||||||||||||||||||||||||||||||.||||||||
Sbjct 667 CTCTCCTATCGAGCCCCAGAAATGGTCAACTTGTACAGTGGCAAAATCATCACTACGAAGGCAGATATTTGGGC 740
Query 741 TCTTGGATGTTTGTTGTATAAATTATGCTACTTCACTTTGCCATTTGGGGAAAGTCAGGTGGCAATTTGTGATG 814
|||.||.|||||||||||||||||||||||||||||||||||.||||||||.||.||||||||.||||||||.|
Sbjct 741 TCTAGGCTGTTTGTTGTATAAATTATGCTACTTCACTTTGCCGTTTGGGGAGAGCCAGGTGGCGATTTGTGACG 814
Query 815 GAAACTTCACAATTCCTGATAATTCTCGATATTCTCAAGACATGCACTGCCTAATTAGGTATATGTTGGAACCA 888
|||.||||||||||||||||||.|||||.|||||||||||.|||||||||||.|||||||||||||||||||||
Sbjct 815 GAAGCTTCACAATTCCTGATAACTCTCGTTATTCTCAAGATATGCACTGCCTTATTAGGTATATGTTGGAACCA 888
Query 889 GACCCTGACAAAAGGCCGGATATTTACCAGGTGTCCTACTTCTCATTTAAGCTACTCAAGAAAGAGTGCCCAAT 962
||||||||||||||||||||||||||||||||.||.||||||||||||||.||||||||||||||.|||||..|
Sbjct 889 GACCCTGACAAAAGGCCGGATATTTACCAGGTTTCATACTTCTCATTTAAACTACTCAAGAAAGAATGCCCCGT 962
Query 963 TCCAAATGTACAGAACTCTCCCATTCCTGCAAAGCTTCCTGAACCAGTGAAAGCCAGTGAGGCAGCTGCAAAAA 1036
|||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||.|||||||..||||
Sbjct 963 TCCAAATGTACAGAACTCTCCCATTCCTGCAAAACTTCCTGAACCAGTGAAAGCCAGTGAAGCAGCTGTGAAAA 1036
Query 1037 AGACCCAGCCAAAGGCCAGACTGACAGATCCCATTCCCACCACAGAGACTTCAATTGCACCCCGCCAGAGGCCT 1110
|||||||||||||||||||||||||.|||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 1037 AGACCCAGCCAAAGGCCAGACTGACCGATCCCATTCCCACCACAGAGACTTCAATCGCACCCCGCCAGAGGCCT 1110
Query 1111 AAAGCTGGGCAGACTCAGCCGAACCCAGGAATCCTTCCCATCCAGCCAGCGCTGACACCCCGGAAGAGGGCCAC 1184
||||||||||||||||||||.||||||||.||||||||||||||||||||.|||||.||.||||||||||||||
Sbjct 1111 AAAGCTGGGCAGACTCAGCCAAACCCAGGCATCCTTCCCATCCAGCCAGCCCTGACTCCTCGGAAGAGGGCCAC 1184
Query 1185 TGTTCAGCCCCCACCTCAGGCTGCAGGATCCAGCAATCAGCCTGGCCTTTTAGCCAGTGTTCCCCAACCAAAAC 1258
|||||||||||.||||||||||||||||.||||||||||||||||.|||.||.||||||||.|||||||.|||.
Sbjct 1185 TGTTCAGCCCCTACCTCAGGCTGCAGGACCCAGCAATCAGCCTGGACTTCTACCCAGTGTTTCCCAACCTAAAG 1258
Query 1259 CCCAAGCCCCACCCAGCCAGCCTCTGCCGCAAACTCAGGCCAAGCAGCCACAGGCTCCTCCCACTCCACAGCAG 1332
||||||||.|||||||.||.|||||.|.|..|.||||..|||||||.|||||.|||||.|||||.|||||||||
Sbjct 1259 CCCAAGCCACACCCAGTCAACCTCTTCAGTCATCTCAACCCAAGCAACCACAAGCTCCACCCACCCCACAGCAG 1332
Query 1333 ACGCCTTCTACTCAGGCCCAGGGTCTGCCCGCTCAGGCCCAGGCCACACCCCAGCACCAGCAGCATACA----- 1401
||.|||.||||.|||.|.||.|||.|||||.|.||||||||||||||.||||||||||||||||| |||
Sbjct 1333 ACACCTGCTACCCAGACACAAGGTTTGCCCACCCAGGCCCAGGCCACTCCCCAGCACCAGCAGCA-ACACCTCC 1405
Query 1402 --ATAAAACTTAGTATGAAACTTT-------------------------------------------------- 1423
|...||| ||.| |.|||...
Sbjct 1406 TCAAGCAAC--AGCA-GCAACAGCAGCAACAGCCTCAGCAGCCTACAGCACCACCACAGCCTGCAGGCACCTTT 1476
Query 1424 -------------------------------------------------------------------------- 1423
Sbjct 1477 TACCAGCAGCAGCAGCAACAGCAGCAGCAGCAGGCTCAGACTCAGCAGTTTCAGGCAGTACATCCAGCAGCCCA 1550
Query 1424 -------------------------------------------------------------------------- 1423
Sbjct 1551 GCAACCAGTCACTGCTCAGTTCCCTGTGGGGTCCCAGGGAGGTGCTCAGCAACAGCTGATGCAGAACTTCTACC 1624
Query 1424 -------------------------------------------------------------------------- 1423
Sbjct 1625 ACCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCTGATGGCTCAGCAGGCTGCCCTGCAGCAGAAGACTGCT 1698
Query 1424 -------------------------------------------------------------------------- 1423
Sbjct 1699 GTGGTAGTACCACAGTCTCAGGCACAGCCCGCCACAGCCCCACAGGCAGCTGCTGCCCAGGAGCCTGGGCAGAT 1772
Query 1424 -------------------------------------------------------------------------- 1423
Sbjct 1773 TCAAGCCCCAGTGAGACAACAGCCAAAAGTTCAGACCACTCCACCTCCAACCATCCAGGGACAGAAAGTTGGAT 1846
Query 1424 -------------------------------------------------------------------------- 1423
Sbjct 1847 CTCTCACTCCTCCATCATCACCCAAAACCCAACGTGCTGGGCACAGACGGATTCTCAGTGATGTAACCCACAGT 1920
Query 1424 -------------------------------------------------------------------------- 1423
Sbjct 1921 GCAGTCTTTGGGGTTCCTGCCAGCAAATCAACCCAGCTGCTCCAGGCAGCTGCAGCTGAGGCCAGTCTCAATAA 1994
Query 1424 -------------------------------------------------------------------------- 1423
Sbjct 1995 ATCTAAGTCTGCAACCACCACTCCCTCAGGCTCTCCACGGACTTCACAGCAGAATGTCTCCAATGCTTCAGAAG 2068
Query 1424 -------------------------------------------------------------------------- 1423
Sbjct 2069 GCTCCACATGGAATCCTTTTGATGACGACAACTTCTCCAAACTCACAGCTGAAGAGCTGCTAAACAAGGACTTT 2142
Query 1424 -------------------------------------------------------------------------- 1423
Sbjct 2143 GCCAAGCTTGGGGAAGGAAAGCTGCCTGAGAAGCTTGGTGGCTCTGCAGAGAGTTTGATCCCAGGCTTCCAGCC 2216
Query 1424 -------------------------------------------------------------------------- 1423
Sbjct 2217 AACACAAGGAGATGCCTTCACCACTCCTTCTTTTTCTGCTGGAACTGCTGAAAAAAGGAAGGGGGGCCAGGCTG 2290
Query 1424 -------------------------------------------------------------------------- 1423
Sbjct 2291 TGGACTCTGGCATCCCACTTCTAAGTGTGTCTGATCCCTTCATTCCTCTTCAAGTACCTGATGCTCCAGAAAAA 2364
Query 1424 -------------------------------------------------------------------------- 1423
Sbjct 2365 CTAATCGAGGGACTCAAATCTCCTGACACTTCTCTTCTGCTCCCTGACCTCTTGCCTATGACAGATCCTTTTGG 2438
Query 1424 -------------------------------------------------------------------------- 1423
Sbjct 2439 CAGCACTTCTGATGCTGTTATTGACAAAGCTGATGTTGCTGTTGAGAGTCTCATACCTGGACTGGAGCCACCTG 2512
Query 1424 -------------------------------------------------------------------------- 1423
Sbjct 2513 TTGCTCAGCGCCTCCCATCTCAAACGGAATCTGTGACCTCGAACCGCACAGACTCTCTCACGGGGGAAGACTCT 2586
Query 1424 -------------------------------------------------------------------------- 1423
Sbjct 2587 CTGCTTGACTGCTCTCTGCTTTCTAACCCTACTGCTGGCCTTCTGGAGGAGTTTGCCCCCATAGCACTCTCTGC 2660
Query 1424 -------------------------------------------------------------------------- 1423
Sbjct 2661 TCCCACTCATAAAGCTGCAGAAGATAGCAATCTCATCTCAGGTTTTGGTGTTGCTGAGGGCTCCGAAAAGGTGG 2734
Query 1424 -------------------------------------------------------------------------- 1423
Sbjct 2735 CAGAAGATGAGTTTGACCCTATTCCTGTACTAATTACCAAAAACACACAAGGTGGGCACTCTAGGAACAGCAGT 2808
Query 1424 --------------------------------------------------------------------- 1423
Sbjct 2809 GGGAGCTCTGAGTCCAGTCTTCCCAACCTAGCCAGGTCTTTGCTGCTGGTGGATCAGCTCATAGACCTG 2877
