Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15896
- Subject:
- XR_001782601.1
- Aligned Length:
- 5122
- Identities:
- 525
- Gaps:
- 4520
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATACGTCCGCCATTTTGGGCGCTTCGCTGATGGTGTCGGTGAACCTTTTTCCCGCCTGAGCGCGACTAACTGCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGTCTTGGGCGCCTCCAGAACAGCATGTTTTGGAAATTTGATCTTCACTCATCATCCCACATAGACACGCTTCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGAGAGAGAAGATGTGACACTGAAGGAGCTAATGGATGAGGAGGATGTTCTACAGGAGTGTAAAGCACAGAACC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCAAGCTCATAGAATTTCTGTTAAAAGCAGAATGTCTGGAAGATTTAGTCTCATTCATTATAGAAGAACCACCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAAGATATGGATGAGAAGATCCGATACAAGTATCCAAATATATCTTGTGAGTTGCTCACATCTGATGTCTCCCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAGTCCCCCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGAACCCACTACTCGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAGATTGTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAATTGGCTAAATGAGGAGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GGATTATCCAGAGGCTTGTGGAAATAGTTCACCCATCGCAAGAAGAAGATCGGCATTCAAATGCCTCACAATCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGCCACTCTAGAAAAGCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTTCACAAGGAGAAGAATGAATCGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCATAGTCAGTGCAATTCAGATTTTGCTGACTTTGCTTGAGACTCGACGGCCAACGTTTGAAGGCCATATAGAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAGAAAAGTGTGATGAAGACTACATGGGGTATATTGGACC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CACCTGTGGGGAATACTCGATTAAATGTCATTAGGTTGATATCCAGCCTGCTCCAAACCAATACCAGCAGCATA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AATGGAGACCTGATGGAACTGAACAGCATTGGCGTCATATTGGATATGTTCTTCAAGTACACATGGAATAACTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAGAATGGCACAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCATCTTTTTCAAAAGTGTCAGTTAATAGAGCGA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ATACTTGAAGCCTGGGACACAAATGAGAAGAAACAGGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AAGATCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AACACGGTAGATCTAGTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTTCTCACAGGATTCCTCTTTACAGCAAGCCTTTTCTGATTATCAGATGCAACAAATGACGTCCAATTTTATTG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAATGTTTCTTTTGATCGGGTGTCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GATATCAACTTTACTCTCAATACAAATGAAAGTGGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGAT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CCCAGAGGAGGTCCAGCTCTGGCAGTACGGACAGTGAAGAAAGTACAGACTCTGAAGAAGAAGATGGGGCCAAA 2072
Query 1 ------------------------------------------ATGGAGGTGGACCTGAGTGAACCACCCAACTG 32
|||||||||||.||||.|||.|||||||.|||
Sbjct 2073 CAAGACCTGTTTGAGTCCAGCAGTGCAAACACAGAGGACAAAATGGAGGTGGATCTGAATGAGCCACCCACCTG 2146
Query 33 GTCAGCTAACTTTGATGTCCCAATGGAAACAACCCACGGTGCTCCATTGGATTCTGTGGGATCTGATGTCTGGA 106
||||||.||||||||.||||||||||||||.|||||.||||||||.||.||.||.||||||||.||||||||||
Sbjct 2147 GTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGA 2220
Query 107 GCACAGAGGAGCCGATGCCAACTAAAGAGACGGGCTGGGCTTCTTTTTCAGAGTTCACGTCTTCCCTGAGCACA 180
|||||||||||||.|||||||||||||||||.|||||||||||.||||||||||||||.||.||||||||||||
Sbjct 2221 GCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGAGCACA 2294
Query 181 AAAGATTCTTTAAGGAGTAATTCTCCAGTGGAAATGGAAACCAGCACTGAACCCATGGACCCTCTGACTCCCAG 254
||.||.|||||||||||||||||.||.||||||||||||||||||||||||.||.|||||||..||||.||..|
Sbjct 2295 AAGGAGTCTTTAAGGAGTAATTCGCCTGTGGAAATGGAAACCAGCACTGAATCCGTGGACCCCTTGACACCTGG 2368
Query 255 TGCGGCTGCCCTGG-CAGTGCAGCCAGAAGCGGCAGGCAGTGTGGCCATGGAAGCCAGCTCTGACGGAGAGGAG 327
|||.||||||.||| ||.| ||||||||.||..||||||||.|||||||||||||||||||.||.||.||.|||
Sbjct 2369 TGCAGCTGCCTTGGCCACT-CAGCCAGAGGCACCAGGCAGTATGGCCATGGAAGCCAGCTCAGATGGGGAAGAG 2441
Query 328 GATGCAGAAAGTACAGACAAGGTAACTGAGACAGTGATGAATGGCGGCATGAAGGAAACGCTCAGCCTCACTGT 401
|||||.||.|||||||||||||||||||||||.||||||||||||||||||||||||||.||||||||||||||
Sbjct 2442 GATGCTGAGAGTACAGACAAGGTAACTGAGACCGTGATGAATGGCGGCATGAAGGAAACACTCAGCCTCACTGT 2515
Query 402 AGATGCCAAGACAGAGACTGCGGTCTTCAAA------------------------------------------- 432
|||.|||||||||||||||||.|||||||||
Sbjct 2516 AGACGCCAAGACAGAGACTGCAGTCTTCAAAAGGTTCTCTTCACACCTCCACCGACTCTGCGGGGTGCCATGTG 2589
Query 433 -------------------------------------------------------------------------- 432
Sbjct 2590 CAGTCGTGGACATGTTTCCCCAATTCCTCATTTCTAGGAGTGTTCTGAAACTCTTGTACGTTTCTTTTTCTGTT 2663
Query 433 -------------------------------------------------------------------------- 432
Sbjct 2664 TTGCACACTTGGCCTCAGAGTGTTGAAGTCCTACCGGTATGTACGGTGACACGGGCCGCTCTTTCTCAGACACC 2737
Query 433 -------------------------------------------------------------------------- 432
Sbjct 2738 AGCCACATTACATTGTCCCTCTCAGTTCCTACCTGCGTGTGGCCCTTTCCTCTCGTGGTTCCCCAGTCACTGTC 2811
Query 433 -------------------------------------------------------------------------- 432
Sbjct 2812 TGCATTTCTGTGATCCTTCCACCCTGAGCATGCTCAGCCCCAGGGCTTGCCACCGTGGCAGTCATGACTTCAGA 2885
Query 433 -------------------------------------------------------------------------- 432
Sbjct 2886 GCCATTTGCATGTGAGCTCATCCTCTGGCCCTGGTCGTGGTGCCTAGTATGTAATGCACCTAACTTCCTCTCTC 2959
Query 433 ----AGTGAGGAAGGGAAACTGTCTACCTCTCAAGATGCTGCTTGTAAAGACGCAGAGGAGTGTCCCGAGACTG 502
||||||||||..|||||||||||||||||||||||||||||.|||||.|||||.|||...||.|||.|.|
Sbjct 2960 CTGTAGTGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAG 3033
Query 503 CAGAGGCGAAGTGCGCGGCGCCCAGGCCTCCCAGCAGCAGTCCCGAGCAGAGGACTGGCCAACCAAGCGCACCA 576
|||||||.||||||.|.||.|||..|.||||||||||.|||||||||||.|||||.|.|||.||||||...|||
Sbjct 3034 CAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAGGACCGACCAGCCAAGCATGCCA 3107
Query 577 GGTGACACTTCAGTGAATGGCCCTGTA----------------------------------------------- 603
.|.|||.|.|||||.||||||||||||
Sbjct 3108 AGCGACCCATCAGTTAATGGCCCTGTATGATGAGTGACGTCCACTGCTGCTGACTGAGGACTGCAGGCCACCAC 3181
Query 604 -------------------------------------------------------------------------- 603
Sbjct 3182 CACCCAGGGGCTCTGGAGGGCTCACCCAGAGCTACTGAGCCACCACTACTGCACTCTGCAAGAGATCAGAACCA 3255
Query 604 -------------------------------------------------------------------------- 603
Sbjct 3256 GCAGCCTTTCTGTTTCTAGATTCTAAGATGCTGTACAGAGAGACTCAGACATGTAAAACACTGCACATTGACAA 3329
Query 604 -------------------------------------------------------------------------- 603
Sbjct 3330 ATACCAAGAATTTTTTTGCGTATGTTTATATTGTATTGATCTAAATACTGGGTAGCCTGTGACACCAGATCTTG 3403
Query 604 -------------------------------------------------------------------------- 603
Sbjct 3404 CCGCCCATGTAATAATAGTAATGATACATAGTTCAGATGGTTGTAAGAATAGTTTTATAAAGTGACTACACAGA 3477
Query 604 -------------------------------------------------------------------------- 603
Sbjct 3478 TCTATTGTATTCGAAACATAACTATTTGACAATTATTAGTGTGACCAAAGTATTAGGCAGTTTTCATACATTTT 3551
Query 604 -------------------------------------------------------------------------- 603
Sbjct 3552 CCACCTTGTACAAAATTCTGAATTCATTTTTCTTCCAGGTTGGCACGGAGCTGTCGATGGAAAAGCCCTCTGCG 3625
Query 604 -------------------------------------------------------------------------- 603
Sbjct 3626 TGTTATATTTTGGTTGTTCTGACTTACAAAGTGATTTTGAATAAGAAATACTTGGTGTTTTTTTATAACCCACT 3699
Query 604 -------------------------------------------------------------------------- 603
Sbjct 3700 TTCAATTGGTAACTGTTTTCTGTATTGTTTCAGGCGGATCAAATGCTTGAGTCTTGGTGGAGATTAAGTATTTA 3773
Query 604 -------------------------------------------------------------------------- 603
Sbjct 3774 TTGCTACAACTTAGTTGATGAATTGCTGTTCTTGTAAAGCCATATGTTCTGTTAAGGTCTGGTTTGCTCAGAGC 3847
Query 604 -------------------------------------------------------------------------- 603
Sbjct 3848 GTTTCTTTCTGCAGGTGAAACACTAGAATATTGGAGTGTACATGGCTGTGGTTAGAATTTTAGGGGGGTTGGGG 3921
Query 604 -------------------------------------------------------------------------- 603
Sbjct 3922 GGTGTTTGTTTTTTGTTTTGTTTTGGTAGTTCATCCGCCTTTTAACCCATTCACCAAAATGTCCCTTGTCAGCA 3995
Query 604 -------------------------------------------------------------------------- 603
Sbjct 3996 AGTATCACTGATGGCTATTTCAGAGTGGTCTGCACCCACACTGCTCTGTGTCACAGAGGTGAGTCTGGAATGCT 4069
Query 604 -------------------------------------------------------------------------- 603
Sbjct 4070 CATGTGGTGACAGGGTAGAGTGTGCCCATCACGCGGGCTGGCTGTAACAGAATCACAACCTGGCATCCAAGCAT 4143
Query 604 -------------------------------------------------------------------------- 603
Sbjct 4144 GTTTCTTGTTTTACTGTACCTTGTGAGGTTTTCACTTGTAAACCAGTGGATTTTAGAACTGGTTTGTGTGTATA 4217
Query 604 -------------------------------------------------------------------------- 603
Sbjct 4218 TAGTGATTATGGATACTAATTCAGTGTAATTTATAATTTTCTATGTCAGCGTAAACACATCCTAGCCTCCTCCA 4291
Query 604 -------------------------------------------------------------------------- 603
Sbjct 4292 ACAGCTGAAGCAATGGCCTGTGCACTGCCGCGGCATCGGGTGAAGAGCTCAGTCACCTCGCCTCTTGCACTTTT 4365
Query 604 -------------------------------------------------------------------------- 603
Sbjct 4366 AGATGCAGATCAGTTTTTCATTCTATAATAGAAAATATTCACATATTTTTACATCATTTGTTTTTTCCTGACCA 4439
Query 604 -------------------------------------------------------------------------- 603
Sbjct 4440 GTATTTAAAACCAAAAGGATATTCTGAAAAAATGGCCAACAAGTTTTTTAGAACCAGCATCCCAAGCAGTGTGC 4513
Query 604 -------------------------------------------------------------------------- 603
Sbjct 4514 CTACATGACATCGCGTATGGAGATAGAGTCGAGTGTCCAATGCCTTACTCCTTACTCGCTTCTCACTGTACACA 4587
Query 604 -------------------------------------------------------------------------- 603
Sbjct 4588 GTGCAAGGGACCACCTCAGGTGGCCGAGGCAGGCCTGGTCACCAGGCTCAGTGGGCAGCAGGAAGCCCTGGGAC 4661
Query 604 -------------------------------------------------------------------------- 603
Sbjct 4662 TGGTGGCGAGGGGCTCGGTGGCCTGTGCTTGCCCGCTCAGGACCCTTCAGTCACAGCTCCTTCAGAAGAGACTG 4735
Query 604 -------------------------------------------------------------------------- 603
Sbjct 4736 CGTTCTCTGGAACCTGGTGCCACCAGAGGACAGGGCTCCTTCTGCTCGTCTCAGGGATGGTTGACCTGCGTGGC 4809
Query 604 -------------------------------------------------------------------------- 603
Sbjct 4810 CCAGGACCTCACATTGCTGGCGGATGGCATTCTCCTGTCTCACCTGGTTGACAAGCCTTGCTGACCCCAGCCAG 4883
Query 604 -------------------------------------------------------------------------- 603
Sbjct 4884 GACTTGGCTCCTCCTAGTCAGCCCACACTGCCTCCTTGCTGTGGACTGGGCTGGCTTTTCTGTCCCACTGTCCA 4957
Query 604 -------------------------------------------------------------------------- 603
Sbjct 4958 CTGGGAAAGGAACGCTTGGGTACTGTTCTTGGGAAAGGACTTAGGCTTGCTTGTCATAAGGAGAGGCTGTGAGG 5031
Query 604 -------------------------------------------------------------------------- 603
Sbjct 5032 GTGAAAGGGGACAAGGTGTGTTGGGTTGGAGGGTGCCAGCCAGGGCTTGTGATGAGTTCCTGCTCCTTTTCATT 5105
Query 604 ---------------- 603
Sbjct 5106 TCTGTGTATTGGCCGA 5121
