Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15939
- Subject:
- NM_172992.3
- Aligned Length:
- 2241
- Identities:
- 848
- Gaps:
- 1290
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCGTCCAGAGTCACAGATGCTATAGTCTGGTATCAGAAGAAGATTGGAGCCTATGATCAACAAATATGGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAAGTCTGTTGAACAAAGAGAAATCAAGGGCTTAAGGAATAAACCAAAGAAAACAGCACATGTGAAACCAGACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCATCGATGTTGATCTTGTGAGAGGGTCTGCATTTGCTAAGGCAAAGCCTGAAAGTCCTTGGACTTCTCTGACA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGGAAAGGGATTGTTCGAGTTGTCTTTTTCCCTTTCTTCTCCCGCTGGTGGTTACAAGTAACGTCCAGAGTCAT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTTCTCCTGGCTTCTTGTTCTCTATCTTCTCCAAGTTGCTGCAATAGTATTATTCTGTTCCGCTCCTAGCCCAC 370
Query 1 -----------------------------------------ATGCTGCTCCTGGGAACTGTGCATTGCCAGATT 33
||||||||..|||||||.|||||||||||||||
Sbjct 371 ATAGCATACCTCTAACTGAAGTGATTGGGCCAATATGGCTGATGCTGCTTTTGGGAACCGTGCATTGCCAGATT 444
Query 34 GTTTCCACAAGAACACCCAAACCTCCTCTAAGTACAGGGGGTAAAAGAAGAAGGAAATTAAGAAAAGCAGCCCA 107
|||||.||||||||||||||.|||||.|||.|.|||||.||||||.||||||||||||||||||||||||||||
Sbjct 445 GTTTCAACAAGAACACCCAAGCCTCCACTAGGCACAGGCGGTAAACGAAGAAGGAAATTAAGAAAAGCAGCCCA 518
Query 108 TTTGGAAGTACATAGGGAAGGAGATGGTTCTAGTACCACAGATAACACACAAGAGGGAGCAGTTCAGAACCACG 181
|||||||||.||.||||||||.||.||||||||.|||||||||||||||||.||||||||.||.||||.|||||
Sbjct 519 TTTGGAAGTCCACAGGGAAGGGGACGGTTCTAGCACCACAGATAACACACAGGAGGGAGCGGTGCAGAGCCACG 592
Query 182 GTACAAGCACCTCTCACAGCGTTGGCACTGTCTTCAGAGATCTCTGGCATGCTGCTTTCTTTTTATCAGGATCA 255
|..||.||.||.||.||||.||||||||||||||||||||.||.||||.||||||||||||.||||||||.|||
Sbjct 593 GCGCAGGCGCCCCTTACAGTGTTGGCACTGTCTTCAGAGACCTTTGGCTTGCTGCTTTCTTCTTATCAGGGTCA 666
Query 256 AAGAAAGCAAAGAATTCAATTGATAAATCAACTGAAACTGACAATGGCTATGTATCCCTTGATGGGAAGAAGAC 329
|||||.||||||||||||||||||||.|||||.||.|||||||||||||||||.|||||.||||||||||.|||
Sbjct 667 AAGAAGGCAAAGAATTCAATTGATAAGTCAACCGAGACTGACAATGGCTATGTGTCCCTCGATGGGAAGAGGAC 740
Query 330 TGTTAAAAGCGGTGAAGATGGAATACAAAACCATGAACCTCAGTGTGAAACTATTCGACCAGAAGAGACAGCCT 403
|||.||||||.||||.||||||..|||..|||||||.|||||||||||||||.||.||||||||||..||||||
Sbjct 741 TGTAAAAAGCAGTGAGGATGGAGCACAGTACCATGAGCCTCAGTGTGAAACTGTTGGACCAGAAGACGCAGCCT 814
Query 404 GGAACACAGGAACACTGAGGAATGGTCCTAGCAAAGATACCCAAAGGACAATAACAAATGTCTCTGATGAAGTC 477
||..||||.||||.|..||||.||.||||..|||||||||||||||.|..|||||||||||||||||||||||.
Sbjct 815 GGGCCACACGAACGCCAAGGAGTGTTCCTGCCAAAGATACCCAAAGAAAGATAACAAATGTCTCTGATGAAGTA 888
Query 478 TCCAGTGAGGAAGGTCCTGAAACAGGATACTCATTACGTCGTCATGTGGACAGGACTTCTGAAGGTGTTCTTCG 551
|||||||||||.|||||.||||||||||||.||||.|||.|||||||||||||.|||||||||.|.|.||||||
Sbjct 889 TCCAGTGAGGAGGGTCCCGAAACAGGATACCCATTGCGTGGTCATGTGGACAGAACTTCTGAAAGCGGTCTTCG 962
Query 552 GAATAGAAAGTCACACCATTATAAGAAACATTACCCTAATGAGGACGCCCCTAAATCGGGTACTAGTTGCAGCT 625
.|||||||||.|||||||||||||.||.|||||..|.||||||||.||||||||||||||||||||||||||||
Sbjct 963 AAATAGAAAGCCACACCATTATAAAAAGCATTATGCAAATGAGGATGCCCCTAAATCGGGTACTAGTTGCAGCT 1036
Query 626 CTCGCTGTTCAAGTTCCAGACAGGATTCTGAGAGTGCAAGGCCAGAATCTGAAACAGAAGATGTGTTATGGGAA 699
||||||||||||||||||||||||||||||||||..|||||||||||||||||||.||||||||.|||||||||
Sbjct 1037 CTCGCTGTTCAAGTTCCAGACAGGATTCTGAGAGCACAAGGCCAGAATCTGAAACCGAAGATGTATTATGGGAA 1110
Query 700 GACTTGTTACATTGTGCAGAATGCCATTCATCTTGTACCAGTGAGACAGATGTGGAAAATCATCAGATTAATCC 773
|||||||||||.|||||.|||||||..||||||||||||||||||||||||||||.|||.|.||||||.|||||
Sbjct 1111 GACTTGTTACACTGTGCGGAATGCCGCTCATCTTGTACCAGTGAGACAGATGTGGGAAACCCTCAGATAAATCC 1184
Query 774 ATGTGTGAAAAAAGAATATAGAGATGACCCTTTTCATCAGAGTCATTTGCCCTGGCTCCATAGTTCCCACCCAG 847
|||||.|||.||||||||||||||.||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 1185 ATGTGGGAAGAAAGAATATAGAGACGACCCTTTTCATCAGAGTCATTTGCCCTGGCTTCATAGTTCCCACCCAG 1258
Query 848 GATTAGAAAAAATAAGTGCTATAGTATGGGAAGGTAATGATTGTAAGAAAGCAGACATGTCTGTACTTGAAATC 921
|||||||||||||.|||||||||||.|||||||||||.||.|||||||||||||||||||||||||||||||||
Sbjct 1259 GATTAGAAAAAATCAGTGCTATAGTGTGGGAAGGTAACGACTGTAAGAAAGCAGACATGTCTGTACTTGAAATC 1332
Query 922 AGTGGAATGATAATGAACAGAGTGA-----------------------------GTTTT--------------- 951
|||||.||||||||||||||||||| ||.||
Sbjct 1333 AGTGGGATGATAATGAACAGAGTGAACAACCATGTCCCAGGCATAGGATACCAGGTATTTGGAAATGCCATCTC 1406
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1407 TCTAATCCTGGGCTTGACCCCATTTGTTTTCCGACTGTCACAAGCAACAGACTTGGAGCAGCTCACAGCCCATT 1480
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1481 CTGCGTCAGAACTTTATGTGATTGCGTTTGGCTCTAACGAAGATGTCATGGTTCTTTCTATGGTCCTGATAAGT 1554
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1555 TTTGTGGTTCGAGTCTCTCTTGTGTGGATCTTCTTTTTTTTGCTGTGTGTAGCAGAAAGAACATATAAGCAACG 1628
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1629 ATTACTCTTTGCAAAACTCTTTGGACACTTGACGTCTGCAAGGAGAGCTCGCAAATCTGAGGTTCCGCATTTCC 1702
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1703 GGTTGAAGAAAGTACAGAATATAAAAATGTGGCTGTCTCTGCGTTCCTATCTTAAGCGCCGAGGCCCTCAGCGA 1776
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1777 TCTGTGGATGTCATTGTCTCATCGGCCTTCTTACTGACAATCTCAGTTGTGTTTATCTGCTGTGCACAGCTGCT 1850
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1851 CCACGTGCACGAGATCTTCCTTGACTGTCACTATAACTGGGAGCTGGTGATCTGGTGCATCTCCTTAACGCTGT 1924
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1925 TCCTCCTGAGGTTCGTTACTCTTGGATCAGAAACCAGCAAGAAATACAGCAATACCTCAATCCTACTTACGGAA 1998
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1999 CAGATAAACCTCTACTTGAAAATGGAGAAGAAACCTAACAAAAAGGAGGAGCTGACCCTTGTGAATAATGTGTT 2072
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2073 AAAGCTGGCTACGAAACTGCTGAAGGAATTGGACAGTCCCTTTAGGTTGTATGGACTTACAATGAATCCGCTGC 2146
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2147 TGTATAACATCACCCAGGTTGTCATCCTTTCGGCTGTTTCCGGTGTCATCAGTGACTTGCTTGGATTTAATTTA 2220
Query 952 --------------------- 951
Sbjct 2221 AAGCTGTGGAAGATCAAATCG 2241
