Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15988
- Subject:
- XR_001781569.1
- Aligned Length:
- 2039
- Identities:
- 652
- Gaps:
- 1308
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTCCAGACTACAGCTCCCGGCATGCCCTGCACCTGGTACTCGCCCGCGGCGTGCGGAGGGAAGGATGCAGACA 74
Query 1 ------------ATGAGGATGGAGGCCGGGGAGGCAGCGCCGCCGGCGGGGGCGGGCGGCCGCGCCACAGGCGG 62
|||||||||||||||||||||||||||||.||||.||||||||||||||||.||...|||||
Sbjct 75 ACGCGGCCGGCGATGAGGATGGAGGCCGGGGAGGCAGCGCCACCGGTGGGGGCGGGCGGCCGCCCCGGGGGCGG 148
Query 63 CTGGGGCAAGTGGGTGCGGCTCAACGTGGGGGGCACGGTGTTCCTGACCACCCGGCAGACGCTGTGCCGCGAGC 136
|||||||||||||||||||||.||||||||||||||||||||||||||||||||.|||||||||||.||.||||
Sbjct 149 CTGGGGCAAGTGGGTGCGGCTGAACGTGGGGGGCACGGTGTTCCTGACCACCCGCCAGACGCTGTGTCGGGAGC 222
Query 137 AGAAGTCCTTCCTCAGCCGCCTGTGCCAGGGGGAAGAGCTGCAGTCGGACCGGGATGAGACCGGGGCCTACCTC 210
|||||||||||||||||||||||||.|||||.||||||||.||.||||||.|||||||||||||||||||||||
Sbjct 223 AGAAGTCCTTCCTCAGCCGCCTGTGTCAGGGCGAAGAGCTTCAATCGGACAGGGATGAGACCGGGGCCTACCTC 296
Query 211 ATTGACCGTGACCCCACCTACTTCGGGCCCATCCTGAACTTCCTCCGGCATGGCAAGCTGGTGCTGGACAAGGA 284
||||||||||||||||||||||||||||||||||||||.||||||.|||||||.||..||||||||||||||||
Sbjct 297 ATTGACCGTGACCCCACCTACTTCGGGCCCATCCTGAATTTCCTCAGGCATGGAAAATTGGTGCTGGACAAGGA 370
Query 285 CATGGCTGAGGAGGGGGTCCTGGAGGAAGCCGAGTTCTACAACATCGGCCCGCTGATCCGCATCATCAAAGACC 358
||||||.|||||||||||||||||||||||.||||||||||||||.||.||.|||||.||.||||||||||||.
Sbjct 371 CATGGCCGAGGAGGGGGTCCTGGAGGAAGCAGAGTTCTACAACATTGGTCCTCTGATTCGAATCATCAAAGACA 444
Query 359 GGATGGAAGAGAAGGACTACACGGTCACCCAGGTCCCACCCAAGCACGTGTACCGCGTGCTGCAGTGCCAGGAG 432
|||||||.|||||.||||||||.||..|||||||.|||||.|||||.||.|||||.||||||||||||||.|||
Sbjct 445 GGATGGAGGAGAAAGACTACACAGTGGCCCAGGTGCCACCTAAGCATGTATACCGAGTGCTGCAGTGCCAAGAG 518
Query 433 GAGGAGCTCACGCAAATGGTCTCCACCATGTCTGATGGCTGGCGCTTCGAGCAGCTGGTGAACATCGGCTCCTC 506
|||||||||||.||.|||||.|||||.|||||.||.||||||||||||||||||||||||||||||||||||||
Sbjct 519 GAGGAGCTCACACAGATGGTATCCACTATGTCCGACGGCTGGCGCTTCGAGCAGCTGGTGAACATCGGCTCCTC 592
Query 507 CTACAACTACGGCAGCGAGGACCAGGCAGAGTTCCTGTGTGTGGTGTCCAAGGAGCTCCACAGCACCCCAAACG 580
|||||||||.||.||.|||||||||||.||||||||||||||||||||.|||||||||||||||.|||||.|||
Sbjct 593 CTACAACTATGGGAGTGAGGACCAGGCCGAGTTCCTGTGTGTGGTGTCTAAGGAGCTCCACAGCTCCCCACACG 666
Query 581 GGCTGAGCTCAGAGTCCAGCCGCAAAACCAAG----------------------------------------AG 614
|.||||||||.|||||||..|||||..||||| |.
Sbjct 667 GCCTGAGCTCCGAGTCCACTCGCAAGGCCAAGCCCTGTCATCTCAGGATCCCGCTAACCTTTTCTCCCTCCCAC 740
Query 615 CAC--------------------------GGAGGAGCAG----------------------------CTGGA-- 632
||| |||||..|.| |||||
Sbjct 741 CACCGCCTCCTCCTCCTCCGCTTCCTGCTGGAGGTCCTGCTTCATCTTCATCCACCTCCTCTTCCTCCTGGATC 814
Query 633 ------------------------------------------------------------------------GG 634
||
Sbjct 815 TCATCTGCACCCTGCCTCTTCCCTCTCTGCCCCTGCCCAGGTTTCCTCTCCGCCTGCTCCCGTCTCCACCCTGG 888
Query 635 AGCAGC-------------------------------AGC--------------------AGCA---------- 647
.||.|| ||| ||||
Sbjct 889 GGCTGCCCTAGTCCCAGTCTCCCGCGCCCTCTCCCCAAGCCCCCTCGCCCTGCATCCCCAAGCATCCTGCCTGC 962
Query 648 -------------------------------------------GGAGGAGGAG-GTGG---------------- 661
||||||||.| ||||
Sbjct 963 CGCCTCCTTCGCCCCTTCCAGCCCCTCCTGCCTCCTGGCCTGGGGAGGAGGGGCGTGGCCGCATCTGCTCTTTG 1036
Query 662 -----------AG------------GAGG-TGGAGGTGG-AACAGG---------------------------- 682
|| |||| |||...||| .|||||
Sbjct 1037 TCCTCCAACCCAGCAGAGCACCTCTGAGGCTGGCCTTGGCCACAGGCCCCACTCTTCCCACTTGCCTCCTCACG 1110
Query 683 ---------TGCAGGTGGAGG------------CAGA--------------TGCACAGGAGAAAGGT------- 714
|||||||....| |||| |||| |.||.||.|
Sbjct 1111 TTTCCTCCTTGCAGGTCCCTGTCCGCACCCTCCCAGACCCAAGCCTGAGCTTGCA---GTGAGAGCTCCTCGGC 1181
Query 715 ---GCAGCCAACCCCCAGGAGGATGATTGC-------------------------------------------- 741
|| |||..|||||| ||| .|||
Sbjct 1182 CCCGC-GCCCGCCCCCA-GAG-----CTGCCGCCCCTGCTATTACAAGCCAGAGGCACCCGGATGTGAGCCCCC 1248
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1249 AGATCACCTCCAGGGACTTGGGGTTCCGATCTGAAATCCTTTATTTTTGTACCACGGGGTGGGCCCCTGGCCCG 1322
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1323 AGGAGGAAGACAAGCCCTCTACCTTGTCAGTGCTGCCTGCATCTGCCGGGCTGAGACTCACTCCTGCCTTGGGG 1396
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1397 CCCAGGCCTGGGGCCCTCTGGGACCTTGGAAGGCCTGACATGGGTCCTGGGGTCTCCAGGCAGAGACGCCAAGG 1470
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1471 CCAAACTGTGGCACTACCTACCCATATCTTCCAGGCCCTTTTGTCCCCTCACCTGGGCGCCCTTGCTGCATGGC 1544
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1545 GGATACACTCCCTCCCAGTCCCATCATAGCACCTCTTAGAGCCTCAGTCTCTATGGCACCATAGGGTCATCCTC 1618
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1619 TCCTCCCACCTACCTCACAGGGTTGTTGTGAGAATCAGGGAGGATCATGGGGTTCCTGGGAGCCCTGAGTGTGT 1692
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1693 TGGGGCTACAATCATTACCTTCTTAGGGGAAGGGCTCTAGCCCCGCCCCTGTATGGGACACTATGGCCTCAGAT 1766
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1767 ACTGGTGGGGGACAATGTGAGGACTTTGCCAGGCAGGAAGGAAGTTACAGGCTTAACAGCACCTTGGCCACCAC 1840
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1841 TTCTCTGTGCCACCGTGTGTTTGGCAGCAGAGTACAGTGTCCAGGGACTTGGGATGGGGAAGGGGACAGGTGTA 1914
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1915 ACGGGTTGAGCTGTCCCGCCCGTGTCTTGACCACCCCGGGATGGGCACATGTCTGTCAGTTGTGTCCCACCCGC 1988
Query 742 ----------------------------------------- 741
Sbjct 1989 CATGAAATAAAGCTGAACAAACAGGCTTGGCCTGGCTGCCA 2029
