Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_16018
- Subject:
- XR_001752656.1
- Aligned Length:
- 2041
- Identities:
- 929
- Gaps:
- 1080
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTGATTGGAGAAACATTTGTTTTCTCTACGGCTGGTTGGTGTAAGGAGTGTTTCACCACACGGAGATGTGGTCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGTGACTTGTCAACTTTCACCCAGGATGTCTCCCTTCTGACTTCCCCTTAGCAACCAAGTCGCGGCGCTTGGTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCCCAGCAACCGGGAGACGCGTCTGCTGCGTGGAACCGCCGAGTTCCCAGCGCTTGAGAAGGAAAATTCTGGAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTGTTATCTGTGAGGAGGCCACTCCGTTGACAGTTGTGTAAAACTCTGCTGCTTTCCCCAGCTCCAACCTCTCT 296
Query 1 -----------------------------------------ATGAACCAGCCGTGCAACTCGATGGAGCCGAGG 33
|||||||||||||||||||||||||||||||||
Sbjct 297 GGTCTTCAACAACACTATCATCAGGGAAAACGTGGGGGAAGATGAACCAGCCGTGCAACTCGATGGAGCCGAGG 370
Query 34 GTGATGGACGATGACATGCTCAAGCTGGCCGTCGGGGACCAGGGCCCCCAGGAGGAGGCCGGGCAGCTGGCCAA 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GTGATGGACGATGACATGCTCAAGCTGGCCGTCGGGGACCAGGGCCCCCAGGAGGAGGCCGGGCAGCTGGCCAA 444
Query 108 GCAGGAGGGCATCCTCTTCAAGGATGTCCTGTCCCTGCAGCTGGACTTTCGGA--------------------- 160
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GCAGGAGGGCATCCTCTTCAAGGATGTCCTGTCCCTGCAGCTGGACTTTCGGAGAAAAACAGCAGATGAACCCA 518
Query 161 ---------------------------------------ACATCCTCCGCATAGACAACCTCTGGCAGTTTGAG 195
|||||||||||||||||||||||||||||||||||
Sbjct 519 AAGGGGAACAGGATGATGGCCAGGAGGATTCCCAGGAAGACATCCTCCGCATAGACAACCTCTGGCAGTTTGAG 592
Query 196 AACTTGAGGAAGCTGCAGCTGGACAATAACATCATTGAGAAGATCGAGGGCCTGGAGAACCTCGCACACCTGGT 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AACTTGAGGAAGCTGCAGCTGGACAATAACATCATTGAGAAGATCGAGGGCCTGGAGAACCTCGCACACCTGGT 666
Query 270 CTGGCTGGATCTGTCTTTCAACAACATTGAGACCATCGAGGGGCTGGACACACTGGTGAACCTGGAGGACCTGA 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CTGGCTGGATCTGTCTTTCAACAACATTGAGACCATCGAGGGGCTGGACACACTGGTGAACCTGGAGGACCTGA 740
Query 344 GCTTGTTCAACAACCGGATCTCCAAGATCGACTCCCTGGACGCCCTCGTCAAGCTGCAGGTGTTGTCGCTGGGC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCTTGTTCAACAACCGGATCTCCAAGATCGACTCCCTGGACGCCCTCGTCAAGCTGCAGGTGTTGTCGCTGGGC 814
Query 418 AACAACCGGATTGACAACATGATGAACATCATCTACCTTCGGCGGTTCAAGTGCCTGCGGACGCTCAGCCTCTC 491
||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 815 AACAACCGGATTGACAACATGATGAACATCATCTACCTCCGGCGGTTCAAGTGCCTGCGGACGCTCAGCCTCTC 888
Query 492 TAGGAACCCTATCTCTGAGGCAGAGGATTACAAGATGTTCATCTGTGCCTACCTTCCTGACCTCATGTACCTGG 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TAGGAACCCTATCTCTGAGGCAGAGGATTACAAGATGTTCATCTGTGCCTACCTTCCTGACCTCATGTACCTGG 962
Query 566 ACTACTGGCGCATTGATGACCACACA------------------------------------------------ 591
|||||.||||||||||||||||||||
Sbjct 963 ACTACCGGCGCATTGATGACCACACAGCAAGTGTCTCCCTCTCAGTCTCCCAGCCCTGTGAGACAGATTCCTCA 1036
Query 592 ---------AAAAAGCTTGCGGAGGCTAAGCACCAGTACAGCATCGACGAGCTGAAGCACCAGGAGAACCTGAT 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGCCCCCAGAAAAAGCTTGCGGAGGCTAAGCACCAGTACAGCATCGACGAGCTGAAGCACCAGGAGAACCTGAT 1110
Query 657 GCAGGCCCAGCTGGAGGACGAGCAGGCGCAGCGGGAGGAGCTAGAGAAGCACAAGACTGCGTTTGTGGAACACC 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GCAGGCCCAGCTGGAGGACGAGCAGGCGCAGCGGGAGGAGCTAGAGAAGCACAAGACTGCGTTTGTGGAACACC 1184
Query 731 TGAATGGCTCCTTCCTGTTTGACAGCATGTACGCTGAGGACTCAGAGGGCAACAATCTGTCCTACCTGCCTGGT 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGAATGGCTCCTTCCTGTTTGACAGCATGTACGCTGAGGACTCAGAGGGCAACAATCTGTCCTACCTGCCTGGT 1258
Query 805 GTCGGTGAGCTCCTTGAGACCTACA-AGGACAAGTTTGTCATCATCTGCGTGAATATTTTTGAGTATGGCCTGA 877
||||.|| |||.|||.| || |||||..|.||| ||| ||||
Sbjct 1259 GTCGTTG----CCTGGAGCC---CAGAGGACGTGGTTG-------------------------GTA---CCTG- 1296
Query 878 AACAGCAGGAGAAGCGGAAAACAGAGCT-TGACACCTTCAGTGAATG---------TGTCCGTGAGGCCATCCA 941
.||..||| ||.|| .||| || |||.||..|.|||| |||
Sbjct 1297 -TCATTAGG----GCTGA------GGCTGTG--ACCATCGATCAATGGGCTTAAGTTGT--------------- 1342
Query 942 GGAAAACCAGGAGC--AGGGCAAACGCAAGATTGCCAAATTCGAGGAGAAGCACTTGTCGAGTTTAAGTGCCAT 1013
|||| |||| ||.||.|| ||.|.||.||||| ||..|.||
Sbjct 1343 ----------GAGCTGAGGG---ACTCAGGA----CAGAATCAAGGAG-----CTCCTGGA------------- 1381
Query 1014 TC-GAGAGGAGTTGGAACTGCCCAACATTGAGAAGATGATCCTA--GAATGCAGTGCTGACATCAGTGAGTTGT 1084
|| ||||| |..|||| ||| |.||.||| |.|||
Sbjct 1382 TCTGAGAG-----------------CTCTGAG---------CTAAGGCATCCAG---TCACA------------ 1414
Query 1085 TCGATGC--GCTCATGACGCTGGAGATGCAGCTGGTGGAGCAGCTGGAGGAGACTATAAACATGTTTGAAAGGA 1156
|| ||||.||| |.|||||
Sbjct 1415 -----GCCTGCTCCTGA---------------------AACAGCT----------------------------- 1433
Query 1157 ACATTGTTGACATGGTAGGACTGTTTATCGAAAATGTCCAAAGCCTGATGGCTCAGTGCCGGGACCTGGAGAAT 1230
Sbjct 1434 -------------------------------------------------------------------------- 1433
Query 1231 CACCACCACGAGAAGCTCCTGGAGATCTCTATCAGCACCCTGGAGAAGATTGTCGAGGGCGACCTGGACGAGGA 1304
Sbjct 1434 -------------------------------------------------------------------------- 1433
Query 1305 CCTGCCTAACGACCTGCGCGCGCTTTTTGTCGATAAAGATACGATTGTTAATGCTGTCGGGGCATCGCACGACA 1378
Sbjct 1434 -------------------------------------------------------------------------- 1433
Query 1379 TCCACCTCCTGAAGATTGACAATCGAGAAGATGAGCTGGTGACCAGAATCAACTCTTGGTGTACACGTTTAATA 1452
Sbjct 1434 -------------------------------------------------------------------------- 1433
Query 1453 GACAGGATTCACAAGGATGAGATCATGAGGAACCGCAAGCGCGTGAAGGAGATCAATCAGTACATCGACCACAT 1526
Sbjct 1434 -------------------------------------------------------------------------- 1433
Query 1527 GCAGAGCGAACTGGACAACCTGGAATGTGGCGACATCCTAGAC 1569
Sbjct 1434 ------------------------------------------- 1433
