Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_16027
- Subject:
- NR_132428.1
- Aligned Length:
- 3375
- Identities:
- 1104
- Gaps:
- 2224
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTCTGAACGGGACCCTGCAGGTCTTCCGCCTGCTGTTGCATTAAATTTGGGGGTGGAAGAGGCTTCTGCGTTGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCTTACCCGCAACGATGACCATGGCTTTGCCTTCTTTAAAATTGAGGCCTCCAACTCTGACGCTGACTGGAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATTGAAACCCGAACACACATTGGGCTCTTTTGGCACTTGACTAGAGCTAAAACCTCGGGATTCAGCGGGCAAGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTTGCTCAGCAACGGCGCGTAGGCTGTGTGCGGTTGGCTGGAGCCAGACCCCACCCCGGCCTCGGCCCATGCTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TAGAGGGGACGTTGCCCCAATCCTGAAGGACTTCGGCACTCGAGACCTGTGGATGCCGCGTTGCTGTGGCCTGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGGGGTGATCATGAAGCCAGGTGCTACTGGCGAGTCCGATTTGGCCGAAGTGCTGCCCCAGCACAAGTTCGACA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCAAGTCCCTGGAGGCCTACCTAAACCAGCACTTGTCTGGCTTTGGGGCCGAACGTGAGGCTACGCTGACCATT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCCAGTACAGAGCAGGAAAGTCCAATCCAACCTTTTATCTCCAGAAGGGCTTTCAAACATATGTGCTCAGGAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AAAACCACCAGGTTCACTTCTTCCTAAAGCACATCAGATTGATAGAGAATTTAAAGTCCAGAAAGCCTTGTTTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAATTGGATTCCCCGTTCCCAAGCCTATACTGTACTGCAGTGATACTTCTGTCATTGGAACAGAATTTTACGTA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATGGAACATGTGCAGGGTCGAATCTTCCGTGATTTAACAATTCCTGGACTTAGCCCAGCAGAACGTTCAGCCAT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATATGTGGCCACGGTAGAAACATTGGCTCAGTTACATTCCTTGAATATACAGTCACTGCAGCTGGAAGGATATG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTATAGGTGCTGGGTACTGCAAAAGACAGGTATCAACCTGGACAAAGCAATATCAAGCTGCAGCTCATCAGGAC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATCCCTGCCATGCAACAGCTATCGGAGTGGCTAATGAAGAACTTGCCCGATAATGACAATGAAGAGAATTTGAT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TCATGGAGATTTCAGACTAGATAACATAGTTTTCCACCCTAAAGAGTGTCGAGTTATAGCAGTGCTGGATTGGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGCTGTCAACCATTGGTCATCCTTTGTCAGACTTAGCTCATTTTTCCCTGTTCTACTTTTGGCCAAGGACAGTT 1184
Query 1 ---ATGAAACAACACA--TTCTTCCAGCTGAAAA------------------GGAGGTAACTGAGTTC--TATG 49
||||.|.|.|| | |||||..|| |||||| |||.| ||||||.||| |||.
Sbjct 1185 CCAATGATAAATCA-AGGTTCTTATAG-TGAAAACTCAGGGATACCATCAATGGAAG-AACTGATTTCAATATA 1255
Query 50 TT-------CA----AAATGAAAATTC-----------AGTGGA-------------------------CAAG- 75
|| || ||.| ||||| |.|||| .|||
Sbjct 1256 TTGCCGCTGCAGGGGAATT---AATTCTATTCTTCCTAACTGGAATTTCTTTCTTGCCCTTTCATATTTTAAGA 1326
Query 76 TGG--GGAAAACCTTTAGTGATT--------GATAAACTCAAGGAAATGGCCAAAGTC----GAGGGTCTCTGG 135
||| ||||.|.| ..||.||.| ||||...||..|||||| ||.|| ||||.|
Sbjct 1327 TGGCTGGAATAGC-ACAGGGAGTATATAGCAGATATCTTCTGGGAAAT-----AATTCATCTGAGGAT------ 1388
Query 136 AACTTGTT-TTTGCCA-------------GCTGTCAG----CGGACT-CAGC------CACG------------ 172
|.|||.|| ||||||| .|||.||| .||||| ||.| .|||
Sbjct 1389 AGCTTTTTATTTGCCAATATTGTGCAACCTCTGGCAGAAACTGGACTACAACTCTCCAAACGAACTTTCAGTAC 1462
Query 173 TGGACTATGCC-----TTGAT--TGCTGAA--------------------GAAA---CAGGAAAATGCTT-TTT 215
||.|||| || ||||| |.|||.| |||| |||| ||.|.||| ||.
Sbjct 1463 TGTACTA--CCACAGATTGATACTACTGGACAGTTGTTTGTACAGACTCGGAAAGGTCAGG-AAGTTCTTATTA 1533
Query 216 TGCTCCAG-ATGTCTTTAA----------CTGCCAAGC--ACCAGACACAGGGAATATGGAGGTTCTGCACCTG 276
.|.|..|| ||.||.|.|| ||.|| ||| |..|||||||||||||||||||||||||||||||
Sbjct 1534 AGGTGAAGCATTTCATGAAACAACACATTCTTCC-AGCTGAAAAGACACAGGGAATATGGAGGTTCTGCACCTG 1606
Query 277 TATGGAAGTGAGGAACAGAAGAAACAGTGGCTTGAGCCTCTTCTTCAAGGGAACATTACCTCTTGCTTCTGTAT 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 TATGGAAGTGAGGAACAGAAGAAACAGTGGCTTGAGCCTCTTCTTCAAGGGAACATTACCTCTTGCTTCTGTAT 1680
Query 351 GACAGAACCTGATGTAGCTTCAAGTGATGCCACGAATATTGAATGCAGCATCCAACGAGATGAAGATAGCTATG 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GACAGAACCTGATGTAGCTTCAAGTGATGCCACGAATATTGAATGCAGCATCCAACGAGATGAAGATAGCTATG 1754
Query 425 TAATTAACGGCAAAAAATGGTGGAGCAGTGGAGCTGGGAATCCCAAGTGCAAAATTGCAATTGTTTTGGGAAGA 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1755 TAATTAACGGCAAAAAATGGTGGAGCAGTGGAGCTGGGAATCCCAAGTGCAAAATTGCAATTGTTTTGGGAAGA 1828
Query 499 ACTCAAAATACTTCTCTCTCCAGACACAAACAGCACAGCATGATTCTTGTTCCCATGAACACACCTGGAGTAAA 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1829 ACTCAAAATACTTCTCTCTCCAGACACAAACAGCACAGCATGATTCTTGTTCCCATGAACACACCTGGAGTAAA 1902
Query 573 AATAATAAGGCCTTTGTCAGTTTTTGGCTACACAGATAATTTTCATGGAGGACATTTTGAGATCCATTTTAATC 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1903 AATAATAAGGCCTTTGTCAGTTTTTGGCTACACAGATAATTTTCATGGAGGACATTTTGAGATCCATTTTAATC 1976
Query 647 AAGTGCGAGTTCCTGCCACAAATCTAATACTAGGTGAAGGTAGGGGATTTGAAATTTCCCAAGGCCGCCTTGGA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 AAGTGCGAGTTCCTGCCACAAATCTAATACTAGGTGAAGGTAGGGGATTTGAAATTTCCCAAGGCCGCCTTGGA 2050
Query 721 CCTGGCAGAATCCACCACTGTATGAGAACAGTAGGTTTGGCGGAACGCGCTTTGCAGATCATGTGTGAGCGGGC 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2051 CCTGGCAGAATCCACCACTGTATGAGAACAGTAGGTTTGGCGGAACGCGCTTTGCAGATCATGTGTGAGCGGGC 2124
Query 795 AACACAAAGGATAGCTTTCAAGAAGAAGTTGTATGCACATGAGGTTGTGGCTCACTGGATTGCTGAAAGCCGCA 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2125 AACACAAAGGATAGCTTTCAAGAAGAAGTTGTATGCACATGAGGTTGTGGCTCACTGGATTGCTGAAAGCCGCA 2198
Query 869 TTGCCATTGAGAAGATCCGCTTGTTGACTCTGAAAGCTGCTCACAGCATGGACACTCTGGGCAGTGCTGGCGCT 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2199 TTGCCATTGAGAAGATCCGCTTGTTGACTCTGAAAGCTGCTCACAGCATGGACACTCTGGGCAGTGCTGGCGCT 2272
Query 943 AAGAAAGAGATTGCAATGATCAAAGTGGCTGCCCCACGGGCTGTCAGCAAAATCGTTGACTGGGCCATCCAGGT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2273 AAGAAAGAGATTGCAATGATCAAAGTGGCTGCCCCACGGGCTGTCAGCAAAATCGTTGACTGGGCCATCCAGGT 2346
Query 1017 GTGCGGAGGTGCTGGTGTTTCCCAGGATTACCCTCTGGCTAACATGTATGCTATAACCCGAGTTTTGCGTTTAG 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2347 GTGCGGAGGTGCTGGTGTTTCCCAGGATTACCCTCTGGCTAACATGTATGCTATAACCCGAGTTTTGCGTTTAG 2420
Query 1091 CAGATGGACCTGACGAAGTTCATCTTTCAGCAATCGCAACAATGGAGCTGCGGGACCAAGCCAAAAGACTGACA 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2421 CAGATGGACCTGACGAAGTTCATCTTTCAGCAATCGCAACAATGGAGCTGCGGGACCAAGCCAAAAGACTGACA 2494
Query 1165 GCCAAGATA----------------------------------------------------------------- 1173
|||||||||
Sbjct 2495 GCCAAGATATAAGGAGGGTGGCACTGCCACATCCCACTGGCAGAAACTCTCCTTTATACAAACTTCATTGGCTC 2568
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2569 CAACATTTGAATCTCATATTTTTGTAGCAGTTTGAGCACAGGGTTAATTATTCATTTGTGGTAAAGATTATAGC 2642
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2643 ATCTATTTTGATCAGTGGGTTTTATTATTTCAAGGGTCACACAGGGTTAAGTTCAGTAAGAAATGCTGTAGCTG 2716
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2717 TTGTCATTCAATCTAGTGCCTCCTTGAGGCCAGGAGTTCAGGACCAGCCTGGGCAACATAGCGAGACCCCCATT 2790
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2791 GCTACAAAAAATTTAAAAATGAAACAAGTGTGGTGGCACATGCTTGTAGTCCTAGCTACTTGGGAGGCTGAGGC 2864
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2865 AGGAGGATTGCTTGAGTCTAGGAGTTTGAGGTTACAGTAAGCTGTGATCGTGACATGGCCTCCAGCCTGGGTGA 2938
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2939 CCGAGTGAGACTGTTTCTAAAAATAAAAACAAAAAATAAATTTCTTCTTGAGGTGGGGTGGAGGTGGGGAGCAA 3012
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 3013 GAATTTGACCTGGCTCTGATCCCTGGTGTGTTGTGTGGGCCTCTTTAACGTTTGCCACTGAGCCTTAACCTCAC 3086
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 3087 TGTACTTCACTGTACTTCACACGCATTGGTGTTAACATTTTAATCTTAGAAGACCCTGACCCACTGAGGGTTTG 3160
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 3161 TTGTGAGAATTGCTGAAGCCACGTAGAAGCACCTTGAAATCTGTAAAACCACAAGAAAGTACTTTATAAAAGGT 3234
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 3235 ATCCTTATTTGAAGTGGATAAATCTTGTAACTCGAAAAGTTGTGATTTAGAAGACAGGATTGTTTTTGAACATT 3308
Query 1174 --------------------------------------------- 1173
Sbjct 3309 AGGAATTAAAGGCTATATCTGGTCCTTACAAAAAAAAAAAAAAAA 3353
