Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_16053
Subject:
NM_001320317.1
Aligned Length:
2301
Identities:
2115
Gaps:
186

Alignment

Query    1  ATGAGCCACGCAGTAACCATCGAGGAGCCCCAGGCCCAGCCGCAGGTGTCTCAAACTCGGTACCGGGAGAGGTC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GCGGGCTGGGAGCCACATCTCCTCCAATCGAGCGTATGATTTTCTGTACGATCCATTGTTTATTGTGTCAAGTG  148
                                               ||||||||||||||                         
Sbjct    1  -----------------------------------ATGATTTTCTGTAC-------------------------  14

Query  149  AGAAAGACCATACACAGGCAAATATCCAAGCTACCCTGATTCGCAGCAGACTGAGAAAAGTTCCCAGGTTTAAA  222
                                                                ||||||||||||||||||||||
Sbjct   15  ----------------------------------------------------GAGAAAAGTTCCCAGGTTTAAA  36

Query  223  ACCATGTTCAGTAACCTGATCCATTATCCAAGATACTCTCTATATTGGAGCAAGTCAGATCCTGTCCCACCATT  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   37  ACCATGTTCAGTAACCTGATCCATTATCCAAGATACTCTCTATATTGGAGCAAGTCAGATCCTGTCCCACCATT  110

Query  297  TATCAGTCGGGAATGGAAGGGACATAAGGAGAAACACAGAGAAGCCCTCCGGCAGCTCACCACAACTGACGCTT  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  111  TATCAGTCGGGAATGGAAGGGACATAAGGAGAAACACAGAGAAGCCCTCCGGCAGCTCACCACAACTGACGCTT  184

Query  371  CTTTTCAGATGCCTAAAGAAGTTTATGAAGATCCTGAAGTTACTGGAAAGAATCGCTATAAATACTTTGAAAGG  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  185  CTTTTCAGATGCCTAAAGAAGTTTATGAAGATCCTGAAGTTACTGGAAAGAATCGCTATAAATACTTTGAAAGG  258

Query  445  CCTTTTCTCCCATTTTTTCAGCAGATGCCATTCAATGTTGTTTATGCCGTATCCAAGGCAGAACCATACACTTT  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  259  CCTTTTCTCCCATTTTTTCAGCAGATGCCATTCAATGTTGTTTATGCCGTATCCAAGGCAGAACCATACACTTT  332

Query  519  TCCTCCTACTTCTACTAAGCACCTATCCATCCCTTCAAAGTCTACTGTGGGCACTCAGACTGATTATCGGGATG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  333  TCCTCCTACTTCTACTAAGCACCTATCCATCCCTTCAAAGTCTACTGTGGGCACTCAGACTGATTATCGGGATG  406

Query  593  CTGACGTTCAAACAGATCCATACTCTCCAGAATATGTAGTATGTCAGGACTCAATCCCTGAGCTCTTGACCCTG  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  407  CTGACGTTCAAACAGATCCATACTCTCCAGAATATGTAGTATGTCAGGACTCAATCCCTGAGCTCTTGACCCTG  480

Query  667  GCTACGCTTACTTGGGGTCGGGGTCTCCCAGCAGGACAAGCTGAGGTGGAGATGATAGAAAGAGCCCGCGAGAA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  GCTACGCTTACTTGGGGTCGGGGTCTCCCAGCAGGACAAGCTGAGGTGGAGATGATAGAAAGAGCCCGCGAGAA  554

Query  741  GCGTGCTTGGGAAGCCTCTCTCCCCGCTCTGAGTGACACCTCCCAGTTTGAGAAGAGGAGGAAAATGATGAATG  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  555  GCGTGCTTGGGAAGCCTCTCTCCCCGCTCTGAGTGACACCTCCCAGTTTGAGAAGAGGAGGAAAATGATGAATG  628

Query  815  AAATGGAGAGGAAGGAGTGGGCCTTCAGAGAGCAGGAGATTGAAAAACTGCAGGAGATTCGCCTGGAAGTTCTA  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  629  AAATGGAGAGGAAGGAGTGGGCCTTCAGAGAGCAGGAGATTGAAAAACTGCAGGAGATTCGCCTGGAAGTTCTA  702

Query  889  AAAGAGCTGTTGAGGAAGCGTGAAGAGAATCAGAATGAAGTGAATATGAAGCACTTGAATGCCCGGTGGTCTAA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  703  AAAGAGCTGTTGAGGAAGCGTGAAGAGAATCAGAATGAAGTGAATATGAAGCACTTGAATGCCCGGTGGTCTAA  776

Query  963  ACTGCAGGAGGGAAAAGAGGCAAAAATGGCAAAAATTCAGCGCACGCATGTATCAACAATCAGAAAACTTGTAG  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  777  ACTGCAGGAGGGAAAAGAGGCAAAAATGGCAAAAATTCAGCGCACGCATGTATCAACAATCAGAAAACTTGTAG  850

Query 1037  GAAAGAGAAAGAATATAGAAGGGAAGTTGGAGAGAAGAAATATCATCAAGGATTATTCTGATTATGCATCACAG  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  851  GAAAGAGAAAGAATATAGAAGGGAAGTTGGAGAGAAGAAATATCATCAAGGATTATTCTGATTATGCATCACAG  924

Query 1111  GTCTATGGACCTCTGTCTCGTCTTGGGTGTTTCCCAGACAACAACTCAGAGGACTTTGTAGTAAAAAACTACTA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  925  GTCTATGGACCTCTGTCTCGTCTTGGGTGTTTCCCAGACAACAACTCAGAGGACTTTGTAGTAAAAAACTACTA  998

Query 1185  TCTCAACACCTATGAAGGATTAGTGGAACTTGAGTCATGTCTCCCAGATTTTGTGACACAACCCCAAATCAGAG  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  999  TCTCAACACCTATGAAGGATTAGTGGAACTTGAGTCATGTCTCCCAGATTTTGTGACACAACCCCAAATCAGAG  1072

Query 1259  CTCCAAAACCTAAAGTCATTACCACCAAAGCTGGTTTTCTGAAGAGGGCAGCAAGGTTGGACTATGAGTTGGCA  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073  CTCCAAAACCTAAAGTCATTACCACCAAAGCTGGTTTTCTGAAGAGGGCAGCAAGGTTGGACTATGAGTTGGCA  1146

Query 1333  GAGGTTCATAAGGCACTGTTGGATAAGAAGAATAAAGTTCTTGAAGTAAAGAAACCCCCTCGCTTCCTTCAAAG  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147  GAGGTTCATAAGGCACTGTTGGATAAGAAGAATAAAGTTCTTGAAGTAAAGAAACCCCCTCGCTTCCTTCAAAG  1220

Query 1407  AAACCCAATACCTCAACCTCGGCTTCCAACTCCAACCTTGGAAATGACGTCCAATGAAGAAGAAGAAATGGAAA  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221  AAACCCAATACCTCAACCTCGGCTTCCAACTCCAACCTTGGAAATGACGTCCAATGAAGAAGAAGAAATGGAAA  1294

Query 1481  TGGCTGTGATCTACCTTCAAAAGTTACTCCGGGGCAGAGTCGTTCAGAACATGATGTTTGAAGGGAAAGAAAAG  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295  TGGCTGTGATCTACCTTCAAAAGTTACTCCGGGGCAGAGTCGTTCAGAACATGATGTTTGAAGGGAAAGAAAAG  1368

Query 1555  CGACTGGAGTTGATCCAGGAGTTGCGCACCTGCCACGCACTACAAGAAGATGAAAAGCTGGTGAAAAAAGCCGA  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369  CGACTGGAGTTGATCCAGGAGTTGCGCACCTGCCACGCACTACAAGAAGATGAAAAGCTGGTGAAAAAAGCCGA  1442

Query 1629  GAAGCAAGTGACCCTGGCCTTACAGCGGCAGAGGAACTTGCATGAGCACAAGGTGTCACTGGTTGAAAACCATT  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443  GAAGCAAGTGACCCTGGCCTTACAGCGGCAGAGGAACTTGCATGAGCACAAGGTGTCACTGGTTGAAAACCATT  1516

Query 1703  TGGCCGGACTGGAAGGAAGGGCACTAGCAGACATGTTTGACTTCCTGTCCAAAGAGCTGGTGAGACTGCAGGAG  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517  TGGCCGGACTGGAAGGAAGGGCACTAGCAGACATGTTTGACTTCCTGTCCAAAGAGCTGGTGAGACTGCAGGAG  1590

Query 1777  GAGAGGAGGATCCATGCCTTTGTCATGCTGGCTGAGCGCCAGCGGCGGGTACGAGAGGCTGAAGAGAGTGGTCG  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591  GAGAGGAGGATCCATGCCTTTGTCATGCTGGCTGAGCGCCAGCGGCGGGTACGAGAGGCTGAAGAGAGTGGTCG  1664

Query 1851  GCGCCAGGTGGAAAAACAGCGCCTGCGGGAGGAGGACGAGATATTTAAGGAGGTGGTTAAAGTTCACCATAGTA  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665  GCGCCAGGTGGAAAAACAGCGCCTGCGGGAGGAGGACGAGATATTTAAGGAGGTGGTTAAAGTTCACCATAGTA  1738

Query 1925  CTATAAGCTCCTACCTAGAAGACATAATACTGAATACCGAAGCGAATACTGCAGAAGAACAAGCCAGGGCAGAA  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739  CTATAAGCTCCTACCTAGAAGACATAATACTGAATACCGAAGCGAATACTGCAGAAGAACAAGCCAGGGCAGAA  1812

Query 1999  ATAGAGAAGATGGCTGAGAAAATCAATGACATTGCTTATGAAATGGAAAGCCGCCGAACCTATCTTCAGTCAGA  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1813  ATAGAGAAGATGGCTGAGAAAATCAATGACATTGCTTATGAAATGGAAAGCCGCCGAACCTATCTTCAGTCAGA  1886

Query 2073  GGAGATTGTTGCTGAGTTGGTTTATAGTTTTCTGATCCCAGAGGTGCAAAAATACTTTGTCAAAGAAAAAGTGA  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1887  GGAGATTGTTGCTGAGTTGGTTTATAGTTTTCTGATCCCAGAGGTGCAAAAATACTTTGTCAAAGAAAAAGTGA  1960

Query 2147  GGAACGCACAGCGGAAACATATTCTTGCAGCCCATCAGATCATCCACAGTTACACGGAAAGCATGGTTCAAAAG  2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1961  GGAACGCACAGCGGAAACATATTCTTGCAGCCCATCAGATCATCCACAGTTACACGGAAAGCATGGTTCAAAAG  2034

Query 2221  AAATTAACTGAGGGAGAGCAAGATGAGGCCTCAAATGCTGCCATGTTACTTGAGAAAGAAACTCAAAATGAGAA  2294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035  AAATTAACTGAGGGAGAGCAAGATGAGGCCTCAAATGCTGCCATGTTACTTGAGAAAGAAACTCAAAATGAGAA  2108

Query 2295  CAACAGC  2301
            |||||||
Sbjct 2109  CAACAGC  2115

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