Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_16175
Subject:
XM_006505355.3
Aligned Length:
2716
Identities:
2132
Gaps:
428

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCGGGTGACGCCGTTGCCGCGGCGACTCCTCGTCGTCTCCGCCCCCTCCCCCCCCCAAATCCCCTCAGGCTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGCTGCGCCGGGGCCGCCGGCGGGTTCCAGAGGTGGCCTCCGCCCCGGCCGCTCCGCCCACGCCCCCCGCGCCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCGCGCCCGCCTCCGCCCGCCCTGCGCCTCCCTTCCCCCTCCCCGCCCCGCGGCGGCCGCTCGGCCCGGCTCGC  222

Query    1  ---------ATGGCGGCGCTGA------------------------------------------------GCGG  17
                     |||||||||||||                                                ||||
Sbjct  223  GCTTCGAAGATGGCGGCGCTGAGTGGCGGCGGTGGCAGCAGCAGCGGTGGCGGCGGCGGCGGTGGCGGCGGCGG  296

Query   18  TGGCGGT---------GGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCG  82
            |||||||         ||.||||||||.||||.||||||||||||||||||.||.|||||||||||.|||    
Sbjct  297  TGGCGGTGGCGACGGCGGCGGCGGCGCCGAGCAGGGCCAGGCTCTGTTCAATGGCGACATGGAGCCGGAG----  366

Query   83  GCGCCGGCGCCGGCGCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAGGTGTGGAATATCAAACAA  156
              ||||||||.|||||||||||||||||||||||||||||.||||||||.||.|||||.|||||||||||.|||
Sbjct  367  --GCCGGCGCTGGCGCCGCGGCCTCTTCGGCTGCGGACCCGGCCATTCCTGAAGAGGTATGGAATATCAAGCAA  438

Query  157  ATGATTAAGTTGACACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGGGAGCATAATCCACCATCAAT  230
            |||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||||||||
Sbjct  439  ATGATTAAGTTGACACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGAGAGCATAACCCACCATCAAT  512

Query  231  ATATCTGGAGGCCTATGAAGAATACACCAGCAAGCTAGATGCACTCCAACAAAGAGAACAACAGTTATTGGAAT  304
            |||.|||||||||||||||||.||||||||||||||||||||.||.||.|||||||||||.|||.|.|||||||
Sbjct  513  ATACCTGGAGGCCTATGAAGAGTACACCAGCAAGCTAGATGCCCTTCAGCAAAGAGAACAGCAGCTTTTGGAAT  586

Query  305  CTCTGGGGAACGGAACTGATTTTTCTGTTTCTAGCTCTGCATCAATGGATACCGTTACATCTTCTTCCTCTTCT  378
            |.|||||.||.|||.|.||||||||||||||||||||||||||||||||.|||||||||||.||.|||||||||
Sbjct  587  CCCTGGGTAATGGAGCAGATTTTTCTGTTTCTAGCTCTGCATCAATGGACACCGTTACATCCTCCTCCTCTTCT  660

Query  379  AGCCTTTCAGTGCTACCTTCATCTCTTTCAGTTTTTCAAAATCCCACAGATGTGGCACGGAGCAACCCCAAGTC  452
            |||||||||||||||||.||||||||||||||||||||||.|||||||||||...||||||.||||||||||||
Sbjct  661  AGCCTTTCAGTGCTACCATCATCTCTTTCAGTTTTTCAAACTCCCACAGATGCATCACGGAACAACCCCAAGTC  734

Query  453  ACCACAAAAACCTATCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCTGCAAGGTGTGGAGTTA  526
            ||||||.||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||||
Sbjct  735  ACCACAGAAACCTATCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCCGCAAGATGTGGTGTTA  808

Query  527  CAGTCCGAGACAGTCTAAAGAAAGCACTGATGATGAGAGGTCTAATCCCAGAGTGCTGTGCTGTTTACAGAATT  600
            ||||.||||||||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||
Sbjct  809  CAGTTCGAGACAGTCTAAAGAAAGCACTGATGATGAGAGGTCTCATCCCAGAATGCTGTGCTGTTTACAGAATT  882

Query  601  CAGGATGGAGAGAAGAAACCAATTGGTTGGGACACTGATATTTCCTGGCTTACTGGAGAAGAATTGCATGTGGA  674
            ||||||||||||||||||||||||||.||||||||.||.||||||||||||||||||||.||.||.|||||.||
Sbjct  883  CAGGATGGAGAGAAGAAACCAATTGGCTGGGACACGGACATTTCCTGGCTTACTGGAGAGGAGTTACATGTTGA  956

Query  675  AGTGTTGGAGAATGTTCCACTTACAACACACAACTTTGTACGAAAAACGTTTTTCACCTTAGCATTTTGTGACT  748
            |||..||||||||||.||||||||||||||||||||||||||.|||||.|||||||||||||||||||||||||
Sbjct  957  AGTACTGGAGAATGTCCCACTTACAACACACAACTTTGTACGGAAAACTTTTTTCACCTTAGCATTTTGTGACT  1030

Query  749  TTTGTCGAAAGCTGCTTTTCCAGGGTTTCCGCTGTCAAACATGTGGTTATAAATTTCACCAGCGTTGTAGTACA  822
            ||||.||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031  TTTGCCGAAAGCTGCTTTTCCAGGGTTTCCGTTGTCAAACATGTGGTTATAAATTTCACCAGCGTTGTAGTACA  1104

Query  823  GAAGTTCCACTGATGTGTGTTAATTATGACCAACTTGATTTGCTGTTTGTCTCCAAGTTCTTTGAACACCACCC  896
            ||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||.|||||
Sbjct 1105  GAGGTTCCACTGATGTGTGTAAATTATGACCAACTTGATTTGCTGTTTGTCTCCAAGTTCTTTGAGCATCACCC  1178

Query  897  AATACCACAGGAAGAGGCGTCCTTAGCAGAGACTGCCCTAACATCTGGATCATCCCCTTCCGCACCCGCCTCGG  970
            |.||||||||||.|||||.|||||..|||||||||||||..|||||||   ||||.|||||||||||.||||.|
Sbjct 1179  AGTACCACAGGAGGAGGCCTCCTTCCCAGAGACTGCCCTTCCATCTGG---ATCCTCTTCCGCACCCCCCTCAG  1249

Query  971  ACTCTATTGGGCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCA  1044
            ||||||.||||||||||||.|||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250  ACTCTACTGGGCCCCAAATCCTCACCAGTCCATCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCA  1323

Query 1045  GCAGATGAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCCCAATGTGCATATAAACAC  1118
            |||||||||||||||||.|||||.|||||||||||||||||.|||||.||||||||||||||.|||||||||||
Sbjct 1324  GCAGATGAAGATCATCGCAATCAGTTTGGGCAACGAGACCGGTCCTCCTCAGCTCCCAATGTTCATATAAACAC  1397

Query 1119  AATAGAACCTGTCAATATTGATGACTTGATTAGAGACCAAGGATTTCGTGGTGATG------------------  1174
            |||.||.|||||.|||||.|||||.||||||||||||||.||.|||||||||||||                  
Sbjct 1398  AATTGAGCCTGTGAATATCGATGATTTGATTAGAGACCAGGGGTTTCGTGGTGATGGAGCCCCCTTGAACCAAC  1471

Query 1175  --------------------------------------------------------------------------  1174
                                                                                      
Sbjct 1472  TGATGCGCTGTCTTCGGAAATACCAATCCCGGACTCCCAGCCCCCTCCTCCATTCTGTCCCCAGTGAAATAGTG  1545

Query 1175  ----------------------------GAGGATCAACCACAGGTTTGTCTGCTACCCCCCCTGCCTCATTACC  1220
                                        ||||.|||||||||||.|||||.||.|||||.||||||||||||||
Sbjct 1546  TTTGATTTTGAGCCTGGCCCAGTGTTCAGAGGGTCAACCACAGGCTTGTCCGCCACCCCGCCTGCCTCATTACC  1619

Query 1221  TGGCTCACTAACTAACGTGAAAGCCTTACAGAAATCTCCAGGACCTCAGCGAGAAAGGAAGTCATCT------T  1288
            |||||||||.||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||      |
Sbjct 1620  TGGCTCACTCACTAACGTGAAAGCCTTACAGAAATCTCCAGGTCCTCAGCGGGAAAGGAAGTCATCTTCTTCCT  1693

Query 1289  CATCCTCAGAAGACAGGAATCGAATGAAAACACTTGGTAGACGGGACTCGAGTGATGATTGGGAGATTCCTGAT  1362
            |||||||.||.|||||.|.|||.||||||||||||||||||.|.||.||.||||||||.|||||||||||||||
Sbjct 1694  CATCCTCGGAGGACAGAAGTCGGATGAAAACACTTGGTAGAAGAGATTCAAGTGATGACTGGGAGATTCCTGAT  1767

Query 1363  GGGCAGATTACAGTGGGACAAAGAATTGGATCTGGATCATTTGGAACAGTCTACAAGGGAAAGTGGCATGGTGA  1436
            ||.|||||||||||||||||.||||||||||||||.|||||||||||.||||||||||||||||||||||||||
Sbjct 1768  GGACAGATTACAGTGGGACAGAGAATTGGATCTGGGTCATTTGGAACTGTCTACAAGGGAAAGTGGCATGGTGA  1841

Query 1437  TGTGGCAGTGAAAATGTTGAATGTGACAGCACCTACACCTCAGCAGTTACAAGCCTTCAAAAATGAAGTAGGAG  1510
            |||||||||||||||||||||||||||||||||.||||||||.|||.||||.||||||||||||||||||||||
Sbjct 1842  TGTGGCAGTGAAAATGTTGAATGTGACAGCACCCACACCTCAACAGCTACAGGCCTTCAAAAATGAAGTAGGAG  1915

Query 1511  TACTCAGGAAAACACGACATGTGAATATCCTACTCTTCATGGGCTATTCCACAAAGCCACAACTGGCTATTGTT  1584
            |.|||||||||||.|||||||||||||||||.||.||||||||||||||.|||||||||||||||||.||||||
Sbjct 1916  TGCTCAGGAAAACTCGACATGTGAATATCCTCCTTTTCATGGGCTATTCTACAAAGCCACAACTGGCAATTGTT  1989

Query 1585  ACCCAGTGGTGTGAGGGCTCCAGCTTGTATCACCATCTCCATATCATTGAGACCAAATTTGAGATGATCAAACT  1658
            ||.|||||||||||||||||||||||.||||||||||||||.||||||||||||||||||||||||||||||||
Sbjct 1990  ACACAGTGGTGTGAGGGCTCCAGCTTATATCACCATCTCCACATCATTGAGACCAAATTTGAGATGATCAAACT  2063

Query 1659  TATAGATATTGCACGACAGACTGCACAGGGCATGGATTACTTACACGCCAAGTCAATCATCCACAGAGACCTCA  1732
            ||||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2064  TATAGATATTGCTCGGCAGACTGCACAGGGCATGGATTACTTACACGCCAAGTCAATCATCCACAGAGACCTCA  2137

Query 1733  AGAGTAATAATATATTTCTTCATGAAGACCTCACAGTAAAAATAGGTGATTTTGGTCTAGCTACAGAGAAATCT  1806
            ||||||||||||||||||||||||||||||||||.||||||||||||||.|||||||||||.||||.|||||||
Sbjct 2138  AGAGTAATAATATATTTCTTCATGAAGACCTCACGGTAAAAATAGGTGACTTTGGTCTAGCCACAGTGAAATCT  2211

Query 1807  CGATGGAGTGGGTCCCATCAGTTTGAACAGTTGTCTGGATCCATTTTGTGGATGGCACCAGAAGTCATCAGAAT  1880
            ||.||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.||||||||
Sbjct 2212  CGGTGGAGTGGGTCCCATCAGTTTGAACAGTTGTCTGGATCTATTTTGTGGATGGCACCAGAAGTAATCAGAAT  2285

Query 1881  GCAAGATAAAAATCCATACAGCTTTCAGTCAGATGTATATGCATTTGGAATTGTTCTGTATGAATTGATGACTG  1954
            ||||||||||||.||.||.||||||||||||||.||.|||||.|||||.|||||||||||.|||.|||||||.|
Sbjct 2286  GCAAGATAAAAACCCGTATAGCTTTCAGTCAGACGTGTATGCGTTTGGGATTGTTCTGTACGAACTGATGACCG  2359

Query 1955  GACAGTTACCTTATTCAAACATCAACAACAGGGACCAGATAATTTTTATGGTGGGACGAGGATACCTGTCTCCA  2028
            |.|||.||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||.||||||
Sbjct 2360  GCCAGCTACCTTATTCAAACATCAACAACAGGGATCAGATAATTTTTATGGTGGGACGAGGATACCTATCTCCA  2433

Query 2029  GATCTCAGTAAGGTACGGAGTAACTGTCCAAAAGCCATGAAGAGATTAATGGCAGAGTGCCTCAAAAAGAAAAG  2102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2434  GATCTCAGTAAGGTACGGAGTAACTGTCCAAAAGCCATGAAGAGATTAATGGCAGAGTGCCTCAAAAAGAAAAG  2507

Query 2103  AGATGAGAGACCACTCTTTCCCCAAATTCTCGCCTCTATTGAGCTGCTGGCCCGCTCATTGCCAAAAATTCACC  2176
            |||.||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 2508  AGACGAGAGACCACTCTTTCCCCAAATTCTCGCCTCCATTGAGCTGCTGGCCCGCTCATTGCCAAAAATTCACC  2581

Query 2177  GCAGTGCATCAGAACCCTCCTTGAATCGGGCTGGTTTCCAAACAGAGGATTTTAGTCTATATGCTTGTGCTTCT  2250
            ||||||||||||||||.|||||||||||||||||||||||||||||.|||||||||||.|||||||||||||||
Sbjct 2582  GCAGTGCATCAGAACCTTCCTTGAATCGGGCTGGTTTCCAAACAGAAGATTTTAGTCTGTATGCTTGTGCTTCT  2655

Query 2251  CCAAAAACACCCATCCAGGCAGGGGGATATGGTGCGTTT----CCTGTCCAC  2298
            ||.||||||||||||||.||||||||||||||.|..|||    ||| ||.|.
Sbjct 2656  CCGAAAACACCCATCCAAGCAGGGGGATATGGAGAATTTGCAGCCT-TCAAG  2706

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