Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_16175
• Subject: XR_001744857.1
• Aligned Length: 4775
• Identities: 2297
• Gaps: 2477

Alignment

Query    1  --------ATGGCGGCGCTGAGCGGTGGCGGTGGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGAC  66
                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  GTTATAAGATGGCGGCGCTGAGCGGTGGCGGTGGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGAC  74

Query   67  ATGGAGCCCGAGGCCGGCGCCGGCGCCGGCGCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAGGT  140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  ATGGAGCCCGAGGCCGGCGCCGGCGCCGGCGCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAGGT  148

Query  141  GTGGAATATCAAACAAATGATTAAGTTGACACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGGGAGC  214
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GTGGAATATCAAACAAATGATTAAGTTGACACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGGGAGC  222

Query  215  ATAATCCACCATCAATATATCTGGAGGCCTATGAAGAATACACCAGCAAGCTAGATGCACTCCAACAAAGAGAA  288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ATAATCCACCATCAATATATCTGGAGGCCTATGAAGAATACACCAGCAAGCTAGATGCACTCCAACAAAGAGAA  296

Query  289  CAACAGTTATTGGAATCTCTGGGGAACGGAACTGATTTTTCTGTTTCTAGCTCTGCATCAATGGATACCGTTAC  362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CAACAGTTATTGGAATCTCTGGGGAACGGAACTGATTTTTCTGTTTCTAGCTCTGCATCAATGGATACCGTTAC  370

Query  363  ATCTTCTTCCTCTTCTAGCCTTTCAGTGCTACCTTCATCTCTTTCAGTTTTTCAAAATCCCACAGATGTGGCAC  436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ATCTTCTTCCTCTTCTAGCCTTTCAGTGCTACCTTCATCTCTTTCAGTTTTTCAAAATCCCACAGATGTGGCAC  444

Query  437  GGAGCAACCCCAAGTCACCACAAAAACCTATCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCT  510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GGAGCAACCCCAAGTCACCACAAAAACCTATCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCT  518

Query  511  GCAAGGTGTGGAGTTACAGTCCGAGACAGTCTAAAGAAAGCACTGATGATGAGAGGTCTAATCCCAGAGTGCTG  584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GCAAGGTGTGGAGTTACAGTCCGAGACAGTCTAAAGAAAGCACTGATGATGAGAGGTCTAATCCCAGAGTGCTG  592

Query  585  TGCTGTTTACAGAATTCAGGATGGAGAGAAGAAACCAATTGGTTGGGACACTGATATTTCCTGGCTTACTGGAG  658
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TGCTGTTTACAGAATTCAGGATGGAGAGAAGAAACCAATTGGTTGGGACACTGATATTTCCTGGCTTACTGGAG  666

Query  659  AAGAATTGCATGTGGAAGTGTTGGAGAATGTTCCACTTACAACACACAACTTTGTACGAAAAACGTTTTTCACC  732
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AAGAATTGCATGTGGAAGTGTTGGAGAATGTTCCACTTACAACACACAACTTTGTACGAAAAACGTTTTTCACC  740

Query  733  TTAGCATTTTGTGACTTTTGTCGAAAGCTGCTTTTCCAGGGTTTCCGCTGTCAAACATGTGGTTATAAATTTCA  806
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TTAGCATTTTGTGACTTTTGTCGAAAGCTGCTTTTCCAGGGTTTCCGCTGTCAAACATGTGGTTATAAATTTCA  814

Query  807  CCAGCGTTGTAGTACAGAAGTTCCACTGATGTGTGTTAATTATGACCAACTTGATTTGCTGTTTGTCTCCAAGT  880
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CCAGCGTTGTAGTACAGAAGTTCCACTGATGTGTGTTAATTATGACCAACTTGATTTGCTGTTTGTCTCCAAGT  888

Query  881  TCTTTGAACACCACCCAATACCACAGGAAGAGGCGTCCTTAGCAGAGACTGCCCTAACATCTGGATCATCCCCT  954
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TCTTTGAACACCACCCAATACCACAGGAAGAGGCGTCCTTAGCAGAGACTGCCCTAACATCTGGATCATCCCCT  962

Query  955  TCCGCACCCGCCTCGGACTCTATTGGGCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATTCC  1028
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TCCGCACCCGCCTCGGACTCTATTGGGCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATTCC  1036

Query 1029  ACAGCCCTTCCGACCAGCAGATGAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCCCA  1102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  ACAGCCCTTCCGACCAGCAGATGAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCCCA  1110

Query 1103  ATGTGCATATAAACACAATAGAACCTGTCAATATTGATGACTTGATTAGAGACCAAGGATTTCGTGGTGATG--  1174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct 1111  ATGTGCATATAAACACAATAGAACCTGTCAATATTGATGACTTGATTAGAGACCAAGGATTTCGTGGTGATGGA  1184

Query 1175  --------------------------------------------------------------------------  1174
                                                                                      
Sbjct 1185  GCCCCTTTGAACCAGCTGATGCGCTGTCTTCGGAAATACCAATCCCGGACTCCCAGTCCCCTCCTACATTCTGT  1258

Query 1175  --------------------------------------------GAGGATCAACCACAGGTTTGTCTGCTACCC  1204
                                                        ||||||||||||||||||||||||||||||
Sbjct 1259  CCCCAGTGAAATAGTGTTTGATTTTGAGCCTGGCCCAGTGTTCAGAGGATCAACCACAGGTTTGTCTGCTACCC  1332

Query 1205  CCCCTGCCTCATTACCTGGCTCACTAACTAACGTGAAAGCCTTACAGAAATCTCCAGGACCTCAGCGAGAAAGG  1278
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CCCCTGCCTCATTACCTGGCTCACTAACTAACGTGAAAGCCTTACAGAAATCTCCAGGACCTCAGCGAGAAAGG  1406

Query 1279  AAGTCATCTTCATCCTCAGAAGACAGGAATCGAATGAAAACACTTGGTAGACGGGACTCGAGTGATGATTGGGA  1352
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  AAGTCATCTTCATCCTCAGAAGACAGGAATCGAATGAAAACACTTGGTAGACGGGACTCGAGTGATGATTGGGA  1480

Query 1353  GATTCCTGATGGGCAGATTACAGTGGGACAAAGAATTGGATCTGGATCATTTGGAACAGTCTACAAGGGAAAGT  1426
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  GATTCCTGATGGGCAGATTACAGTGGGACAAAGAATTGGATCTGGATCATTTGGAACAGTCTACAAGGGAAAGT  1554

Query 1427  GGCATGGTGATGTGGCAGTGAAAATGTTGAATGTGACAGCACCTACACCTCAGCAGTTACAAGCCTTCAAAAAT  1500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GGCATGGTGATGTGGCAGTGAAAATGTTGAATGTGACAGCACCTACACCTCAGCAGTTACAAGCCTTCAAAAAT  1628

Query 1501  GAAGTAGGAGTACTCAGGAAAACACGACATGTGAATATCCTACTCTTCATGGGCTATTCCACAAAGCCACAACT  1574
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GAAGTAGGAGTACTCAGGAAAACACGACATGTGAATATCCTACTCTTCATGGGCTATTCCACAAAGCCACAACT  1702

Query 1575  GGCTATTGTTACCCAGTGGTGTGAGGGCTCCAGCTTGTATCACCATCTCCATATCATTGAGACCAAATTTGAGA  1648
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  GGCTATTGTTACCCAGTGGTGTGAGGGCTCCAGCTTGTATCACCATCTCCATATCATTGAGACCAAATTTGAGA  1776

Query 1649  TGATCAAACTTATAGATATTGCACGACAGACTGCACAGGGCATGGATTACTTACACGCCAAGTCAATCATCCAC  1722
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  TGATCAAACTTATAGATATTGCACGACAGACTGCACAGGGCATGGATTACTTACACGCCAAGTCAATCATCCAC  1850

Query 1723  AGAGACCTCAAGAGTAATAATATATTTCTTCATGAAGACCTCACAGTAAAAATAGGTGATTTTGGTCTAGCTAC  1796
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  AGAGACCTCAAGAGTAATAATATATTTCTTCATGAAGACCTCACAGTAAAAATAGGTGATTTTGGTCTAGCTAC  1924

Query 1797  AGAGAAATCTCGATGGAGTGGGTCCCATCAGTTTGAACAGTTGTCTGGATCCATTTTGTGGATGGCACCAGAAG  1870
            ||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  AGTGAAATCTCGATGGAGTGGGTCCCATCAGTTTGAACAGTTGTCTGGATCCATTTTGTGGATGGCACCAGAAG  1998

Query 1871  TCATCAGAATGCAAGATAAAAATCCATACAGCTTTCAGTCAGATGTATATGCATTTGGAATTGTTCTGTATGAA  1944
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  TCATCAGAATGCAAGATAAAAATCCATACAGCTTTCAGTCAGATGTATATGCATTTGGAATTGTTCTGTATGAA  2072

Query 1945  TTGATGACTGGACAGTTACCTTATTCAAACATCAACAACAGGGACCA---------------------------  1991
            |||||||||||||||||||||||||||||||||||||||||||||||                           
Sbjct 2073  TTGATGACTGGACAGTTACCTTATTCAAACATCAACAACAGGGACCAGGTGCTTTGTCCTCCATGGGAGTATAA  2146

Query 1992  -------------------------------------------------------GATAATTTTTATGGTGGGA  2010
                                                                   |||||||||||||||||||
Sbjct 2147  TAAATGATGTGGCAAGGGCTTACTCTCCATGAGAGGAATGTGTGACCAACAGAAGGATAATTTTTATGGTGGGA  2220

Query 2011  CGAGGATACCTGTCTCCAGATCTCAGTAAGGTACGGAGTAACTGTCCAAAAGCCATGAAGAGATTAATGGCAGA  2084
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  CGAGGATACCTGTCTCCAGATCTCAGTAAGGTACGGAGTAACTGTCCAAAAGCCATGAAGAGATTAATGGCAGA  2294

Query 2085  GTGCCTCAAAAAGAAAAGAGATGAGAGACCACTCTTTCCCCAAATTCTCGCCTCTATTGAGCTGCTGGCCCGCT  2158
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  GTGCCTCAAAAAGAAAAGAGATGAGAGACCACTCTTTCCCCAAATTCTCGCCTCTATTGAGCTGCTGGCCCGCT  2368

Query 2159  CATTGCCAAAAATTCACCGCAGTGCATCAGAACCCTCCTTGAATCGGGCTGGTTTCCAAACAGAGGATTTTAGT  2232
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  CATTGCCAAAAATTCACCGCAGTGCATCAGAACCCTCCTTGAATCGGGCTGGTTTCCAAACAGAGGATTTTAGT  2442

Query 2233  CTATATGCTTGTGCTTCTCCAAAAACACCCATCCAGGCAGGGGGATATGGTGCGTTTCCTGTCCAC--------  2298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct 2443  CTATATGCTTGTGCTTCTCCAAAAACACCCATCCAGGCAGGGGGATATGGTGCGTTTCCTGTCCACTGAAACAA  2516

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 2517  ATGAGTGAGAGAGTTCAGGAGAGTAGCAACAAAAGGAAAATAAATGAACATATGTTTGCTTATATGTTAAATTG  2590

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 2591  AATAAAATACTCTCTTTTTTTTTAAGGTGAACCAAAGAACACTTGTGTGGTTAAAGACTAGATATAATTTTTCC  2664

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 2665  CCAAACTAAAATTTATACTTAACATTGGATTTTTAACATCCAAGGGTTAAAATACATAGACATTGCTAAAAATT  2738

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 2739  GGCAGAGCCTCTTCTAGAGGCTTTACTTTCTGTTCCGGGTTTGTATCATTCACTTGGTTATTTTAAGTAGTAAA  2812

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 2813  CTTCAGTTTCTCATGCAACTTTTGTTGCCAGCTATCACATGTCCACTAGGGACTCCAGAAGAAGACCCTACCTA  2886

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 2887  TGCCTGTGTTTGCAGGTGAGAAGTTGGCAGTCGGTTAGCCTGGGTTAGATAAGGCAAACTGAACAGATCTAATT  2960

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 2961  TAGGAAGTCAGTAGAATTTAATAATTCTATTATTATTCTTAATAATTTTTCTATAACTATTTCTTTTTATAACA  3034

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 3035  ATTTGGAAAATGTGGATGTCTTTTATTTCCTTGAAGCAATAAACTAAGTTTCTTTTTATAAATTTTGAGTGCAG  3108

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 3109  GTGACCAAAAATATTGCTGAGGAGTGGCACGTTTGACATGAGTAAAATGTCTTAACTTCGGATTTTTAGCGGGA  3182

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 3183  AAATGTTATAAATTGGAGTTTCTTTTAAATAGCTTTTTTTAAAATACATTAAGGATGTCTCGCTCATGTAGAAG  3256

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 3257  TCAAATTTTGTTGCAAACGCATTGCTCCCTTCACACCCAATCTCTCCCCTGCAAAAAATCTTCACAGAATTCTG  3330

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 3331  TGAGAACTTTTAGGTGTGTTTTTCTTTGAGATACCTCTGGTTGCCAAACACCAGGTAATAGATTTTTTAAAGTT  3404

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 3405  GTTATTAGATTATTCTTACCTCTCATGATGCATATTTTAGCAATCACCTTATCATTGTGTCTCATGTTCTGTCC  3478

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 3479  TCCTTATATTCTTTGCCCAGCAAGATTCTACTTATGATGAATGAATGCTCTTCTCCTTTTTTCATTCAATGGTA  3552

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 3553  TGAAGTATTTGTTAGGGTTCTTTAGTACTTACACTTTGTTGTGTAGAAAATGACTGTAATGTGGTGGTCAGTGT  3626

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 3627  ATTCTTACTGTGATTCAGAGGGAATCAAAAGTAGAAAGCAACAGCACGTGGTCCTATCAAAGATTTGGCCATCT  3700

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 3701  CTGCTTCACTGTCAGCCTCTTAACTATATCTTCACTTACTCAATTTGGTTTTGTCATGATTTTTAAATGTAGCC  3774

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 3775  AATAGATCAAGGTTCTTCCAGTAAACACATATCTGCATAAATGCCTCCTTGAAGTCAATAAAGAAGGAAATTGA  3848

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 3849  GAAGACTTTAAATTAATGATAATTTAGTTTTTAAGTACCCACAAATAAATTTTTGAAACATTTTCTTTATTTGA  3922

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 3923  ATACTTAGATGTCATCCAGGAAAATCACTCAATAATAATTACGGCAAATCTTTAACCCCTCATTTGGGTAGCTT  3996

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 3997  AAGATAAGTAATGCCATTATGAATCAGAATTGATTCATGACTTTAGTTAAGAAAATGAAAAGGAACATTTCACG  4070

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 4071  TATTTTTAAAAATGATACTAAGGAATAAAGAAGTACAACTATTGGAAAATATCTAAGTATATGATTTTTAAATC  4144

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 4145  CTCCAGTGGCATTAAATATATGATTATTAGTAATTGTTAGATAGGGTTTTATTCATTCACAAATAGAAGACTAG  4218

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 4219  CAAGCATGTAACTAACAAAGTTTTTACAAAATTGACTTTGTGGAATGCTCCAAATGTTTGGCCATTTTGAGGCA  4292

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 4293  CAAGGTCAGGGGTCTCTTTATTGATAGAGCTCCTTCTATAATTTCCCAGCATACCTGCCTCACAGTTATCTTCC  4366

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 4367  TTTCATTGTTCACTCTCTTTTTCTTCTCAATGCCATCCTGCCTAGGCTCCCATCATCTGCATCTGACACCTTTC  4440

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 4441  CTTTCTTTCTTTACTAGTCTCCTTTGCGATGGGTGTGGCTAAGCTCTGTAGAGCCACTCAGAAACTCATTGTTC  4514

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 4515  CATTCTGTAGCCAGTAAAACATGCCTCCAAAGTGTCACAGAGTAATTCTACTCTCTCTTTTAAATTAGGTCCAC  4588

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 4589  CGGAAATGTTAGTGAAAGGACATTAAAAATGTGACAGGTGACATGTTTAGCTAACATGGATCTGGAGAAATAGG  4662

Query 2299  --------------------------------------------------------------------------  2298
                                                                                      
Sbjct 4663  AAGCAGTAGAATTAAATGTTTCCCTTTCAGGTTTAATTGTATTTGTTCTTGGGTTTTGTTTTATACTGAGTTTT  4736

Query 2299  ---------------------------------------  2298
                                                   
Sbjct 4737  AAATATATTCTCCAAATAAAAACATTATTTTTTCTAACC  4775