Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_16175
- Subject:
- XR_001785087.1
- Aligned Length:
- 2765
- Identities:
- 1063
- Gaps:
- 1616
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCCATGGAAACTGTGCGGGTAGAAACGTGTGAGCGCGAGGGTGGTTGGAGGAGAAGGAACACTCCCCTGGCGAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCGGCGCGAGGGTGCTCCTCGGATGACGTCACGCACCCAGGTGACGTCACGACCGTGACATGCGGGTGACGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTTGCCGCGGCGACTCCTCGTCGTCTCCGCCCCCTCCCCCCCCCAAATCCCCTCAGGCTCGGCTGCGCCGGGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGCCGGCGGGTTCCAGAGGTGGCCTCCGCCCCGGCCGCTCCGCCCACGCCCCCCGCGCCTCCGCGCCCGCCTCC 296
Query 1 ---------------------------------------------------------------------ATGGC 5
|||||
Sbjct 297 GCCCGCCCTGCGCCTCCCTTCCCCCTCCCCGCCCCGCGGCGGCCGCTCGGCCCGGCTCGCGCTTCGAAGATGGC 370
Query 6 GGCGCTGA------------------------------------------------GCGGTGGCGGT------- 24
|||||||| |||||||||||
Sbjct 371 GGCGCTGAGTGGCGGCGGTGGCAGCAGCAGCGGTGGCGGCGGCGGCGGTGGCGGCGGCGGTGGCGGTGGCGACG 444
Query 25 --GGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCGGCGCCGGCGCCGGC 96
||.||||||||.||||.||||||||||||||||||.||.|||||||||||.||| ||||||||.|||
Sbjct 445 GCGGCGGCGGCGCCGAGCAGGGCCAGGCTCTGTTCAATGGCGACATGGAGCCGGAG------GCCGGCGCTGGC 512
Query 97 GCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAGGTGTGGAATATCAAACAAATGATTAAGTTGAC 170
||||||||||||||||||||||||||.||||||||.||.|||||.|||||||||||.|||||||||||||||||
Sbjct 513 GCCGCGGCCTCTTCGGCTGCGGACCCGGCCATTCCTGAAGAGGTATGGAATATCAAGCAAATGATTAAGTTGAC 586
Query 171 ACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGGGAGCATAATCCACCATCAATATATCTGGAGGCCT 244
|||||||||||||||||||||||||||||||||||||||.||||||||.||||||||||||||.||||||||||
Sbjct 587 ACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGAGAGCATAACCCACCATCAATATACCTGGAGGCCT 660
Query 245 ATGAAGAATACACCAGCAAGCTAGATGCACTCCAACAAAGAGAACAACAGTTATTGGAATCTCTGGGGAACGGA 318
|||||||.||||||||||||||||||||.||.||.|||||||||||.|||.|.||||||||.|||||.||.|||
Sbjct 661 ATGAAGAGTACACCAGCAAGCTAGATGCCCTTCAGCAAAGAGAACAGCAGCTTTTGGAATCCCTGGGTAATGGA 734
Query 319 ACTGATTTTTCTGTTTCTAGCTCTGCATCAATGGATACCGTTACATCTTCTTCCTCTTCTAGCCTTTCAGTGCT 392
.|.||||||||||||||||||||||||||||||||.|||||||||||.||.|||||||||||||||||||||||
Sbjct 735 GCAGATTTTTCTGTTTCTAGCTCTGCATCAATGGACACCGTTACATCCTCCTCCTCTTCTAGCCTTTCAGTGCT 808
Query 393 ACCTTCATCTCTTTCAGTTTTTCAAAATCCCACAGATGTGGCACGGAGCAACCCCAAGTCACCACAAAAACCTA 466
|||.||||||||||||||||||||||.|||||||||||...||||||.||||||||||||||||||.|||||||
Sbjct 809 ACCATCATCTCTTTCAGTTTTTCAAACTCCCACAGATGCATCACGGAACAACCCCAAGTCACCACAGAAACCTA 882
Query 467 TCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCTGCAAGGTGTGGAGTTACAGTCCGAGACAGT 540
|||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||||||||.|||||||||
Sbjct 883 TCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCCGCAAGATGTGGTGTTACAGTTCGAGACAGT 956
Query 541 CTAAAGAAAGCACTGATGATGAGAGGTCTAATCCCAGAGTGCTGTGCTGTTTACAGAATTCAGGATGG------ 608
|||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||||||||||
Sbjct 957 CTAAAGAAAGCACTGATGATGAGAGGTCTCATCCCAGAATGCTGTGCTGTTTACAGAATTCAGGATGGGTATGG 1030
Query 609 ---AGAGAAGAAACCAATTGGTTGGGACACTGATATTTCCTGGCTTACTGGAGAAGAATTGCATGTGGAAGTGT 679
||||||||||||||||||.||||||||.||.||||||||||||||||||||.||.||.|||||.|||||..
Sbjct 1031 TTTAGAGAAGAAACCAATTGGCTGGGACACGGACATTTCCTGGCTTACTGGAGAGGAGTTACATGTTGAAGTAC 1104
Query 680 TGGAGAATGTTCCACTTACAACACACAACTTTGTACGAAAAACGTTTTTCACCTTAGCATTTTGTGACTTTTGT 753
||||||||||.||||||||||||||||||||||||||.|||||.|||||||||||||||||||||||||||||.
Sbjct 1105 TGGAGAATGTCCCACTTACAACACACAACTTTGTACGGAAAACTTTTTTCACCTTAGCATTTTGTGACTTTTGC 1178
Query 754 CGAAAGCTGCTTTTCCAGGGTTTCCGCTGTCAAACATGTGGTTATAAATTTCACCAGCGTTGTAGTACAGAAGT 827
||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 1179 CGAAAGCTGCTTTTCCAGGGTTTCCGTTGTCAAACATGTGGTTATAAATTTCACCAGCGTTGTAGTACAGAGGT 1252
Query 828 TCCACTGATGTGTGTTAATTATGACCAACTTGATTTGCTGTTTGTCTCCAAGTTCTTTGAACACCACCCAATAC 901
|||||||||||||||.||||||||||||||||| ||||||||.||.||||||.|||
Sbjct 1253 TCCACTGATGTGTGTAAATTATGACCAACTTGA-------------------TTCTTTGAGCATCACCCAGTAC 1307
Query 902 CACAGGAAGAGGCGTCCTTAGCAGAGACTGCCCTAACATCTGGATCATCCCCTTCCGCACCCGCCTCGGACTCT 975
|||||||.|||||.|||||..|||||||||||||..||||||| ||||.|||||||||||.||||.||||||
Sbjct 1308 CACAGGAGGAGGCCTCCTTCCCAGAGACTGCCCTTCCATCTGG---ATCCTCTTCCGCACCCCCCTCAGACTCT 1378
Query 976 ATTGGGCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCAGCAGA 1049
|.||||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ACTGGGCCCCAAATCCTCACCAGTCCATCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCAGCAGA 1452
Query 1050 TGAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCCCAATGTGCATATAAACACAATAG 1123
||||||||||||.|||||.|||||||||||||||||.|||||.||||||||||||||.||||||||||||||.|
Sbjct 1453 TGAAGATCATCGCAATCAGTTTGGGCAACGAGACCGGTCCTCCTCAGCTCCCAATGTTCATATAAACACAATTG 1526
Query 1124 AACCTGTCAATATTGAT------------------------------------GACTTGATTAGAGACCAAGGA 1161
|.|||||.|||||.||| ||.||||||||||||||.||.
Sbjct 1527 AGCCTGTGAATATCGATGAAAAATTCCCAGAAGTGGAATTACAGGATCAAAGGGATTTGATTAGAGACCAGGGG 1600
Query 1162 TTTCGTGGTGATGGAGGATCAACCACAGGTTTGTCTGCTACCCCCCCTGCCTCATTACCTGGCTCACTAACTAA 1235
||||||||||||||||
Sbjct 1601 TTTCGTGGTGATGGAG---------------------------------------------------------- 1616
Query 1236 CGTGAAAGCCTTACAGAAATCTCCAGGACCTCAGCGAGAAAGGAAGTCATCTTCATCCTCAGAAGACAGGAATC 1309
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1310 GAATGAAAACACTTGGTAGACGGGACTCGAGTGATGATTGGGAGATTCCTGATGGGCAGATTACAGTGGGACAA 1383
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1384 AGAATTGGATCTGGATCATTTGGAACAGTCTACAAGGGAAAGTGGCATGGTGATGTGGCAGTGAAAATGTTGAA 1457
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1458 TGTGACAGCACCTACACCTCAGCAGTTACAAGCCTTCAAAAATGAAGTAGGAGTACTCAGGAAAACACGACATG 1531
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1532 TGAATATCCTACTCTTCATGGGCTATTCCACAAAGCCACAACTGGCTATTGTTACCCAGTGGTGTGAGGGCTCC 1605
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1606 AGCTTGTATCACCATCTCCATATCATTGAGACCAAATTTGAGATGATCAAACTTATAGATATTGCACGACAGAC 1679
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1680 TGCACAGGGCATGGATTACTTACACGCCAAGTCAATCATCCACAGAGACCTCAAGAGTAATAATATATTTCTTC 1753
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1754 ATGAAGACCTCACAGTAAAAATAGGTGATTTTGGTCTAGCTACAGAGAAATCTCGATGGAGTGGGTCCCATCAG 1827
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1828 TTTGAACAGTTGTCTGGATCCATTTTGTGGATGGCACCAGAAGTCATCAGAATGCAAGATAAAAATCCATACAG 1901
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1902 CTTTCAGTCAGATGTATATGCATTTGGAATTGTTCTGTATGAATTGATGACTGGACAGTTACCTTATTCAAACA 1975
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1976 TCAACAACAGGGACCAGATAATTTTTATGGTGGGACGAGGATACCTGTCTCCAGATCTCAGTAAGGTACGGAGT 2049
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 2050 AACTGTCCAAAAGCCATGAAGAGATTAATGGCAGAGTGCCTCAAAAAGAAAAGAGATGAGAGACCACTCTTTCC 2123
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 2124 CCAAATTCTCGCCTCTATTGAGCTGCTGGCCCGCTCATTGCCAAAAATTCACCGCAGTGCATCAGAACCCTCCT 2197
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 2198 TGAATCGGGCTGGTTTCCAAACAGAGGATTTTAGTCTATATGCTTGTGCTTCTCCAAAAACACCCATCCAGGCA 2271
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 2272 GGGGGATATGGTGCGTTTCCTGTCCAC 2298
Sbjct 1617 --------------------------- 1616
