Construct: shRNA TRCN0000239620
Construct Description:
- Construct Type:
- shRNA
- Other Identifiers:
- XM_001480385.1-142s21c1
- DNA Barcode:
- CAGAACCACCTCCGCAGATAT
Original Target:
- Taxon:
-
Mus musculus (mouse)
- Gene:
- Gm5488 (433036)
- Gene Description:
- predicted gene 5488
- Transcript:
- RefSeq XM_001480385.1 (NON-CURRENT)
- Match location:
- Position 142 (CDS)
Vector Information:
- Vector Backbone:
- pLKO_005
- Pol II Cassette 1:
- PGK-PuroR
- Pol II Cassette 2:
- n/a
- Pol III Promoter:
- constitutive hU6
- Pol III Insert:
- (TRCN0000239620)
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
Current transcripts matched by this shRNA:
Sequence Information
- Target Sequence:
- CAGAACCACCTCCGCAGATAT
- Hairpin Sequence:
-
5'-CCGG-CAGAACCACCTCCGCAGATAT-CTCGAG-ATATCTGCGGAGGTGGTTCTG-TTTTTG-3'
Oligo design for arrayed cloning:
- Forward sequence:
- 5'-CCGGCAGAACCACCTCCGCAGATATCTCGAGATATCTGCGGAGGTGGTTCTGTTTTTG-3'
- Reverse sequence:
- 5'-AATTCAAAAACAGAACCACCTCCGCAGATATCTCGAGATATCTGCGGAGGTGGTTCTG-3'
Other clones with same target sequence:
(none)
