Construct: shRNA TRCN0000239933
Construct Description:
- Construct Type:
- shRNA
- Other Identifiers:
- XM_001478220.1-350s21c1
- DNA Barcode:
- AGAGGGCTGAACGATTCAATG
Original Target:
- Taxon:
-
Mus musculus (mouse)
- Gene:
- Gm6563 (625193)
- Gene Description:
- predicted pseudogene 6563; SAP domain containing ribonucleoprotein pseudogene
- Transcript:
- RefSeq XM_001478220.1 (NON-CURRENT)
- Match location:
- Position 350 (CDS)
Vector Information:
- Vector Backbone:
- pLKO_005
- Pol II Cassette 1:
- PGK-PuroR
- Pol II Cassette 2:
- n/a
- Pol III Promoter:
- constitutive hU6
- Pol III Insert:
- (TRCN0000239933)
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
Current transcripts matched by this shRNA:
Sequence Information
- Target Sequence:
- AGAGGGCTGAACGATTCAATG
- Hairpin Sequence:
-
5'-CCGG-AGAGGGCTGAACGATTCAATG-CTCGAG-CATTGAATCGTTCAGCCCTCT-TTTTTG-3'
Oligo design for arrayed cloning:
- Forward sequence:
- 5'-CCGGAGAGGGCTGAACGATTCAATGCTCGAGCATTGAATCGTTCAGCCCTCTTTTTTG-3'
- Reverse sequence:
- 5'-AATTCAAAAAAGAGGGCTGAACGATTCAATGCTCGAGCATTGAATCGTTCAGCCCTCT-3'
Other clones with same target sequence:
(none)
