Construct: shRNA TRCN0000248742
Construct Description:
- Construct Type:
- shRNA
- Other Identifiers:
- NM_145633.3-3956s21c1
- DNA Barcode:
- CTTAAGTCTTTCGATTCAAAT
Original Target:
- Taxon:
-
Mus musculus (mouse)
- Gene:
- Ankrd27 (245886)
- Gene Description:
- ankyrin repeat domain 27 (VPS9 domain)
- Transcript:
- RefSeq NM_145633.3 (CURRENT)
- Match location:
- Position 3956 (3UTR)
Vector Information:
- Vector Backbone:
- pLKO_005
- Pol II Cassette 1:
- PGK-PuroR
- Pol II Cassette 2:
- n/a
- Pol III Promoter:
- constitutive hU6
- Pol III Insert:
- (TRCN0000248742)
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
Current transcripts matched by this shRNA:
Sequence Information
- Target Sequence:
- CTTAAGTCTTTCGATTCAAAT
- Hairpin Sequence:
-
5'-CCGG-CTTAAGTCTTTCGATTCAAAT-CTCGAG-ATTTGAATCGAAAGACTTAAG-TTTTTG-3'
Oligo design for arrayed cloning:
- Forward sequence:
- 5'-CCGGCTTAAGTCTTTCGATTCAAATCTCGAGATTTGAATCGAAAGACTTAAGTTTTTG-3'
- Reverse sequence:
- 5'-AATTCAAAAACTTAAGTCTTTCGATTCAAATCTCGAGATTTGAATCGAAAGACTTAAG-3'
Other clones with same target sequence:
(none)
