Construct: shRNA TRCN0000286823

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_005936.2-3554s21c1
DNA Barcode:
CCAAAGAAATTGCCTGGTGAT

Original Target:

Taxon:
Homo sapiens (human)
Gene:
AFDN (4301)
Gene Description:
afadin, adherens junction formation factor
Transcript:
RefSeq NM_005936.2 (NON-CURRENT)
Match location:
Position 3554 (CDS)

Vector Information:

Vector Backbone:
pLKO_005
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000286823)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
CCAAAGAAATTGCCTGGTGAT
Hairpin Sequence:
5'-CCGG-CCAAAGAAATTGCCTGGTGAT-CTCGAG-ATCACCAGGCAATTTCTTTGG-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGCCAAAGAAATTGCCTGGTGATCTCGAGATCACCAGGCAATTTCTTTGGTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAACCAAAGAAATTGCCTGGTGATCTCGAGATCACCAGGCAATTTCTTTGG-3'

Other clones with same target sequence:

  1. TRCN0000117381