Construct: shRNA TRCN0000316518
Construct Description:
- Construct Type:
- shRNA
- Other Identifiers:
- NM_031159.3-1405s21c1
- DNA Barcode:
- CCTTGGTTTAATTCCAAGAAT
Original Target:
- Taxon:
-
Mus musculus (mouse)
- Gene:
- Apobec1 (11810)
- Gene Description:
- apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
- Transcript:
- RefSeq NM_031159.3 (CURRENT)
- Match location:
- Position 1405 (3UTR)
Vector Information:
- Vector Backbone:
- pLKO_005
- Pol II Cassette 1:
- PGK-PuroR
- Pol II Cassette 2:
- n/a
- Pol III Promoter:
- constitutive hU6
- Pol III Insert:
- (TRCN0000316518)
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
Current transcripts matched by this shRNA:
Sequence Information
- Target Sequence:
- CCTTGGTTTAATTCCAAGAAT
- Hairpin Sequence:
-
5'-CCGG-CCTTGGTTTAATTCCAAGAAT-CTCGAG-ATTCTTGGAATTAAACCAAGG-TTTTTG-3'
Oligo design for arrayed cloning:
- Forward sequence:
- 5'-CCGGCCTTGGTTTAATTCCAAGAATCTCGAGATTCTTGGAATTAAACCAAGGTTTTTG-3'
- Reverse sequence:
- 5'-AATTCAAAAACCTTGGTTTAATTCCAAGAATCTCGAGATTCTTGGAATTAAACCAAGG-3'
Other clones with same target sequence:
-
TRCN0000098680
