Construct: shRNA TRCN0000336016

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_153562.3-1519s21c1
DNA Barcode:
CCTGAACTCTCTCCCAGAAAT

Original Target:

Taxon:
Mus musculus (mouse)
Gene:
Rrnad1 (229503)
Gene Description:
ribosomal RNA adenine dimethylase domain containing 1
Transcript:
RefSeq NM_153562.3 (NON-CURRENT)
Match location:
Position 1519 (CDS)

Vector Information:

Vector Backbone:
pLKO_005
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000336016)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
CCTGAACTCTCTCCCAGAAAT
Hairpin Sequence:
5'-CCGG-CCTGAACTCTCTCCCAGAAAT-CTCGAG-ATTTCTGGGAGAGAGTTCAGG-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGCCTGAACTCTCTCCCAGAAATCTCGAGATTTCTGGGAGAGAGTTCAGGTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAACCTGAACTCTCTCCCAGAAATCTCGAGATTTCTGGGAGAGAGTTCAGG-3'

Other clones with same target sequence:

  1. TRCN0000173738