Construct: shRNA TRCN0000421114
Construct Description:
- Construct Type:
- shRNA
- Other Identifiers:
- NM_015327.2-813s21c1
- DNA Barcode:
- GCAGGCAGCAAGTACTATAAT
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- SMG5 (23381)
- Gene Description:
- SMG5 nonsense mediated mRNA decay factor
- Transcript:
- RefSeq NM_015327.2 (NON-CURRENT)
- Match location:
- Position 813 (CDS)
Vector Information:
- Vector Backbone:
- pLKO_005
- Pol II Cassette 1:
- PGK-PuroR
- Pol II Cassette 2:
- n/a
- Pol III Promoter:
- constitutive hU6
- Pol III Insert:
- (TRCN0000421114)
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
Current transcripts matched by this shRNA:
Sequence Information
- Target Sequence:
- GCAGGCAGCAAGTACTATAAT
- Hairpin Sequence:
-
5'-CCGG-GCAGGCAGCAAGTACTATAAT-CTCGAG-ATTATAGTACTTGCTGCCTGC-TTTTTTGAAT-3'
Oligo design for arrayed cloning:
- Forward sequence:
- 5'-CCGGGCAGGCAGCAAGTACTATAATCTCGAGATTATAGTACTTGCTGCCTGCTTTTTG-3'
- Reverse sequence:
- 5'-AATTCAAAAAGCAGGCAGCAAGTACTATAATCTCGAGATTATAGTACTTGCTGCCTGC-3'
Other clones with same target sequence:
(none)
