Construct: shRNA TRCN0000436579
Construct Description:
- Construct Type:
- shRNA
- Other Identifiers:
- NM_175861.2-3102s21c1
- DNA Barcode:
- TTGAGACCTGGAGATCTAATT
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- TMTC1 (83857)
- Gene Description:
- transmembrane O-mannosyltransferase targeting cadherins 1
- Transcript:
- RefSeq NM_175861.2 (NON-CURRENT)
- Match location:
- Position 3102 (3UTR)
Vector Information:
- Vector Backbone:
- pLKO_005
- Pol II Cassette 1:
- PGK-PuroR
- Pol II Cassette 2:
- n/a
- Pol III Promoter:
- constitutive hU6
- Pol III Insert:
- (TRCN0000436579)
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
Current transcripts matched by this shRNA:
Sequence Information
- Target Sequence:
- TTGAGACCTGGAGATCTAATT
- Hairpin Sequence:
-
5'-CCGG-TTGAGACCTGGAGATCTAATT-CTCGAG-AATTAGATCTCCAGGTCTCAA-TTTTTTGAAT-3'
Oligo design for arrayed cloning:
- Forward sequence:
- 5'-CCGGTTGAGACCTGGAGATCTAATTCTCGAGAATTAGATCTCCAGGTCTCAATTTTTG-3'
- Reverse sequence:
- 5'-AATTCAAAAATTGAGACCTGGAGATCTAATTCTCGAGAATTAGATCTCCAGGTCTCAA-3'
Other clones with same target sequence:
(none)
