Construct: ORF TRCN0000488237

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019456.1_s317c1
DNA Barcode:
CAATGTATCCTACCGGCAATACTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LPAR1 (1902)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488237
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351397.2 99.8% 99.7% 204A>G;1092_1093insG
2 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351398.2 99.8% 99.7% 204A>G;1092_1093insG
3 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351399.2 99.8% 99.7% 204A>G;1092_1093insG
4 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351400.2 99.8% 99.7% 204A>G;1092_1093insG
5 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351401.2 99.8% 99.7% 204A>G;1092_1093insG
6 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351402.2 99.8% 99.7% 204A>G;1092_1093insG
7 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351403.2 99.8% 99.7% 204A>G;1092_1093insG
8 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351404.2 99.8% 99.7% 204A>G;1092_1093insG
9 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351405.2 99.8% 99.7% 204A>G;1092_1093insG
10 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351406.2 99.8% 99.7% 204A>G;1092_1093insG
11 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351407.2 99.8% 99.7% 204A>G;1092_1093insG
12 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351408.2 99.8% 99.7% 204A>G;1092_1093insG
13 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351409.2 99.8% 99.7% 204A>G;1092_1093insG
14 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351410.2 99.8% 99.7% 204A>G;1092_1093insG
15 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351411.2 99.8% 99.7% 204A>G;1092_1093insG
16 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351412.2 99.8% 99.7% 204A>G;1092_1093insG
17 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351413.2 99.8% 99.7% 204A>G;1092_1093insG
18 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351414.2 99.8% 99.7% 204A>G;1092_1093insG
19 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351415.2 99.8% 99.7% 204A>G;1092_1093insG
20 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351416.2 99.8% 99.7% 204A>G;1092_1093insG
21 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351417.2 99.8% 99.7% 204A>G;1092_1093insG
22 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351418.2 99.8% 99.7% 204A>G;1092_1093insG
23 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351419.1 99.8% 99.7% 204A>G;1092_1093insG
24 human 1902 LPAR1 lysophosphatidic acid recep... NM_001351420.1 99.8% 99.7% 204A>G;1092_1093insG
25 human 1902 LPAR1 lysophosphatidic acid recep... NM_001401.5 99.8% 99.7% 204A>G;1092_1093insG
26 human 1902 LPAR1 lysophosphatidic acid recep... NM_057159.4 99.8% 99.7% 204A>G;1092_1093insG
27 human 1902 LPAR1 lysophosphatidic acid recep... XM_005251782.3 99.8% 99.7% 204A>G;1092_1093insG
28 human 1902 LPAR1 lysophosphatidic acid recep... XM_017014404.2 99.8% 99.7% 204A>G;1092_1093insG
29 mouse 14745 Lpar1 lysophosphatidic acid recep... NM_010336.2 90.3% 96.9% (many diffs)
30 mouse 14745 Lpar1 lysophosphatidic acid recep... NM_172989.1 90.3% 96.9% (many diffs)
31 mouse 14745 Lpar1 lysophosphatidic acid recep... XM_011249928.2 90.3% 96.9% (many diffs)
32 mouse 14745 Lpar1 lysophosphatidic acid recep... XM_011249929.2 90.3% 96.9% (many diffs)
33 mouse 14745 Lpar1 lysophosphatidic acid recep... XM_011249930.2 90.3% 96.9% (many diffs)
34 mouse 14745 Lpar1 lysophosphatidic acid recep... XM_011249931.2 90.3% 96.9% (many diffs)
35 mouse 14745 Lpar1 lysophosphatidic acid recep... XM_011249932.2 90.3% 96.9% (many diffs)
36 mouse 14745 Lpar1 lysophosphatidic acid recep... XM_011249933.2 90.3% 96.9% (many diffs)
37 mouse 14745 Lpar1 lysophosphatidic acid recep... XM_011249934.2 90.3% 96.9% (many diffs)
38 mouse 14745 Lpar1 lysophosphatidic acid recep... XM_011249935.2 90.3% 96.9% (many diffs)
39 mouse 14745 Lpar1 lysophosphatidic acid recep... NM_001290486.1 85.9% 92.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
63
ORF end:
1158
ORF length:
1095
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaagcca
61ccatggctgc catctctact tccatccctg taatttcaca gccccagttc acagccatga
121atgaaccaca gtgcttctac aacgagtcca ttgccttctt ttataaccga agtggaaagc
181atcttgccac agaatggaac acagtcagca agctggtgat gggacttgga atcactgttt
241gtatcttcat catgttggcc aacctgttgg tcatggtggc aatctatgtc aaccgccgct
301tccattttcc tatttattac ctaatggcta atctggctgc tgcagacttc tttgctgggt
361tggcctactt ctatctcatg ttcaacacag gacccaatac tcggagactg actgttagca
421catggctcct tcgtcagggc ctcattgaca ccagcctgac ggcatctgtg gccaacttac
481tggctattgc aatcgagagg cacattacgg ttttccgcat gcagctccac acacggatga
541gcaaccggcg ggtagtggtg gtcattgtgg tcatctggac tatggccatc gttatgggtg
601ctatacccag tgtgggctgg aactgtatct gtgatattga aaattgttcc aacatggcac
661ccctctacag tgactcttac ttagtcttct gggccatttt caacttggtg acctttgtgg
721taatggtggt tctctatgct cacatctttg gctatgttcg ccagaggact atgagaatgt
781ctcggcatag ttctggaccc cggcggaatc gggataccat gatgagtctt ctgaagactg
841tggtcattgt gcttggggCC TTTATCATCT GCTGGACTCC TGGATTGGTT TTGTTACTTC
901TAGACGTGTG CTGTCCACAG TGCGACGTGC TGGCCTATGA GAAATTCTTC CTTCTCCTTG
961CTGAATTCAA CTCTGCCATG AACCCCATCA TTTACTCCTA CCGCGACAAA GAAATGAGCG
1021CCACCTTTAG GCAGATCCTC TGCTGCCAGC GCAGTGAGAA CCCCACCGGC CCCACAGAAG
1081GCTCAGACCG CTCGGCTTCC TCCCTCAACC ACACCATCTT GGCTGGAGTT CACAGCAATG
1141ACCACTCTGT GGTTGACCCA GCTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
1201CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
1261TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA CAATGTATCC TACCGGCAAT
1321ACTTACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)