Construct: ORF ccsbBroad304_03534

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006222.1_s304c1, BRDN0000409761
Derived from:
ccsbBroadEn_03534
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
THAP1 (55145)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03534
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55145 THAP1 THAP domain containing 1 NM_018105.3 100% 100%
2 human 55145 THAP1 THAP domain containing 1 NM_199003.1 24.8% 12.1% 71_72ins196;159_160ins284
3 mouse 73754 Thap1 THAP domain containing, apo... NM_199042.2 83.8% 92.4% (many diffs)
4 mouse 73754 Thap1 THAP domain containing, apo... XM_006509202.3 73.2% 81.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
705
ORF length:
639
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggt gcagtcctgc tccgcctacg gctgcaagaa ccgctacgac aaggacaagc
121ccgtttcttt ccacaagttt cctcttactc gacccagtct ttgtaaagaa tgggaggcag
181ctgtcagaag aaaaaacttt aaacccacca agtatagcag tatttgttca gagcacttta
241ctccagactg ctttaagaga gagtgcaaca acaagttact gaaagagaat gctgtgccca
301caatatttct ttgtactgag ccacatgaca agaaagaaga tcttctggag ccacaggaac
361agcttccccc acctccttta ccgcctcctg tttcccaggt tgatgctgct attggattac
421taatgccgcc tcttcagacc cctgttaatc tctcagtttt ctgtgaccac aactatactg
481tggaggatac aatgcaccag cggaaaagga ttcatcagct agaacagcaa gttgaaaaac
541tcagaaagaa gctcaagacc gcacagcagc gatgcagaag gcaagaacgg cagcttgaaa
601aattaaagga ggttgttcac ttccagaaag agaaagacga cgtatcagaa agaggttatg
661tgattctacc aaatgactac tttgaaatag ttgaagtacc agcataccca actttcttgt
721acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
781gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)

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