Construct: ORF ccsbBroad304_03594

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010371.1_s304c1, BRDN0000461329
Derived from:
ccsbBroadEn_03594
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TNFRSF19 (55504)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03594
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55504 TNFRSF19 TNF receptor superfamily me... NM_001204458.3 100% 100%
2 human 55504 TNFRSF19 TNF receptor superfamily me... NM_148957.4 100% 100%
3 human 55504 TNFRSF19 TNF receptor superfamily me... NM_018647.5 98.5% 98.1% 1247delT;1251_1257delGCAGCGA;1260_1269delGGGTTCCCTG
4 human 55504 TNFRSF19 TNF receptor superfamily me... XM_005266445.3 98.5% 98.1% 1247delT;1251_1257delGCAGCGA;1260_1269delGGGTTCCCTG
5 human 55504 TNFRSF19 TNF receptor superfamily me... XM_011535146.1 98.5% 98.1% 1247delT;1251_1257delGCAGCGA;1260_1269delGGGTTCCCTG
6 human 55504 TNFRSF19 TNF receptor superfamily me... XM_017020651.1 98.5% 98.1% 1247delT;1251_1257delGCAGCGA;1260_1269delGGGTTCCCTG
7 human 55504 TNFRSF19 TNF receptor superfamily me... NM_001354985.2 75.6% 70.2% (many diffs)
8 human 55504 TNFRSF19 TNF receptor superfamily me... XM_005266446.2 75.6% 70.2% (many diffs)
9 human 55504 TNFRSF19 TNF receptor superfamily me... NM_001204459.1 68.3% 68.3% 0_1ins396
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1317
ORF length:
1251
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc tttaaaagtg ctactagaac aagagaaaac gtttttcact cttttagtat
121tactaggcta tttgtcatgt aaagtgactt gtgaatcagg agactgtaga cagcaagaat
181tcagggatcg gtctggaaac tgtgttccct gcaaccagtg tgggccaggc atggagttgt
241ctaaggaatg tggcttcggc tatggggagg atgcacagtg tgtgacgtgc cggctgcaca
301ggttcaagga ggactggggc ttccagaaat gcaagccctg tctggactgc gcagtggtga
361accgctttca gaaggcaaat tgttcagcca ccagtgatgc catctgcggg gactgcttgc
421caggatttta taggaagacg aaacttgtcg gctttcaaga catggagtgt gtgccttgtg
481gagaccctcc tcctccttac gaaccgcact gtgccagcaa ggtcaacctc gtgaagatcg
541cgtccacggc ctccagccca cgggacacgg cgctggctgc cgttatctgc agcgctctgg
601ccaccgtcct gctggccctg ctcatcctct gtgtcatcta ttgtaagaga cagtttatgg
661agaagaaacc cagctggtct ctgcggtcac aggacattca gtacaacggc tctgagctgt
721cgtgttttga cagacctcag ctccacgaat atgcccacag agcctgctgc cagtgccgcc
781gtgactcagt gcagacctgc gggccggtgc gcttgctccc atccatgtgc tgtgaggagg
841cctgcagccc caacccggcg actcttggtt gtggggtgca ttctgcagcc agtcttcagg
901caagaaacgc aggcccagcc ggggagatgg tgccgacttt cttcggatcc ctcacgcagt
961ccatctgtgg cgagttttca gatgcctggc ctctgatgca gaatcccatg ggtggtgaca
1021acatctcttt ttgtgactct tatcctgaac tcactggaga agacattcat tctctcaatc
1081cagaacttga aagctcaacg tctttggatt caaatagcag tcaagatttg gttggtgggg
1141ctgttccagt ccagtctcat tctgaaaact ttacagcagc tactgattta tctagatata
1201acaacacact ggtagaatca gcatcaactc aggatgcact aactatgaga agccagctag
1261atcaggagag tggtgctgtc atccacccag ccactcagac gtccctccag gaagcttacc
1321caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
1381ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
1441tta

Download FASTA (ORF) (Full)