Construct: ORF ccsbBroad304_03791

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008114.1_s304c1, BRDN0000461953
Derived from:
ccsbBroadEn_03791
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MAN1C1 (57134)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03791
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57134 MAN1C1 mannosidase alpha class 1C ... NM_020379.3 100% 100%
2 human 57134 MAN1C1 mannosidase alpha class 1C ... NM_001289010.1 93.5% 93.4% 1768_1769delATinsTA;1770_1771ins120
3 human 57134 MAN1C1 mannosidase alpha class 1C ... XM_017001860.1 61.4% 60% 0_1ins613;23_24ins116
4 human 57134 MAN1C1 mannosidase alpha class 1C ... XM_017001861.1 46.2% 35.2% (many diffs)
5 human 57134 MAN1C1 mannosidase alpha class 1C ... XR_001737333.1 37.4% 1_268del;1744_1745ins173;1986_4406del
6 human 57134 MAN1C1 mannosidase alpha class 1C ... XR_001737334.1 36.4% 1_272del;1527_1528ins220;1943_4363del
7 mouse 230815 Man1c1 mannosidase, alpha, class 1... NM_207237.3 84.2% 88.2% (many diffs)
8 mouse 230815 Man1c1 mannosidase, alpha, class 1... XM_011250232.2 69.3% 65.1% (many diffs)
9 mouse 230815 Man1c1 mannosidase, alpha, class 1... XM_006538757.3 62.5% 64.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1959
ORF length:
1890
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gctcatgagg aaagtgcccg gcttcgtccc ggcctccccg tgggggctgc
121ggctgccgca gaagttcctc ttcctcctct tcctctcggg cctggtcacc ctgtgcttcg
181gggccctctt cctgctgccc cactcctctc gcctcaagcg cctcttcctg gccccccgga
241cccagcagcc tggtctggaa gtggtggctg aaatcgccgg ccatgccccg gcccgcgagc
301aggagccgcc tcccaacccg gcccccgccg cgccggcccc gggcgaggat gaccccagca
361gctgggccag tccccgccgc aggaaagggg ggctgcggcg cacccgcccc actggacccc
421gcgaggaggc cacggcggcc cggggcaata gcatcccggc ctccaggccc ggggacgagg
481gcgtcccttt ccgctttgac ttcaacgcat tccggagccg tctccgccac ccggtcctgg
541gaacgagggc cgatgagagt caggagcccc agagccaagt gcgagcccag cgggagaaaa
601tcaaggagat gatgcagttt gcttggcaga gctataagcg ttatgcaatg gggaaaaacg
661aactccgtcc actaacaaaa gatggctacg agggtaacat gttcggaggc ctcagcgggg
721caacagtcat tgactccctc gataccctct acctcatgga gctgaaggag gagttccagg
781aggccaaggc ctgggtggga gagagcttcc acctgaacgt gagcggagaa gcatccttgt
841ttgaggtgaa catccgctac atcgggggac tcctctcagc cttctacctg acaggagaag
901aggtgttccg aataaaggcc atcaggctgg gagagaagct cctgccggcg ttcaacaccc
961ccacgggaat cccaaagggc gtggtgagct tcaaaagtgg gaactggggc tgggccacag
1021ccggcagcag cagcatcttg gcggagtttg gatccctgca cttggaattc ttacacctca
1081ctgaactctc tggcaaccag gtcttcgctg aaaaggtcag gaacatccgc aaggtcctca
1141ggaagatcga aaagcccttt ggcctctacc ccaacttcct cagcccagtg agtgggaact
1201gggtgcaaca ccatgtctca gttggaggac tcggggacag tttttatgaa tatttgatca
1261aatcctggtt gatgtcgggc aagacagata tggaggctaa aaatatgtac tacgaagcct
1321tggaggcgat agagacctac ttgctgaatg tctctcccgg ggggctgacc tacattgccg
1381agtggcgagg ggggattctg gaccacaaga tggggcacct ggcctgtttc tccgggggca
1441tgatcgccct tggcgccgag gatgccaagg aagaaaagag ggcccactac cgagagctcg
1501cagcccagat caccaagacg tgtcacgagt catacgcccg ctcagacacc aaacttgggc
1561ctgaggcctt ctggtttaac tccggcagag aggccgtggc cacccagctg agcgagagct
1621actacatcct ccggccagag gtggtggaga gctacatgta cctgtggcga cagacccaca
1681accccatcta cagggagtgg ggctgggagg tggtgctggc cttggagaaa tactgtcgga
1741cagaagccgg tttctctggg atccaagacg tgtacagtag cacccccaac cacgacaaca
1801agcagcagag cttctttcta gcggagacac taaagtatct ctatcttctg ttctctgaag
1861atgacttgct ctccctggaa gactgggtgt tcaacaccga ggcccaccca ctcccggtga
1921accactcaga cagctccggc agagcctggg gcagacactt gccaactttc ttgtacaaag
1981tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
2041gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)