Construct: ORF ccsbBroad304_04663

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003997.1_s304c1, BRDN0000411951
Derived from:
ccsbBroadEn_04663
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLAMF6 (114836)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_04663
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 114836 SLAMF6 SLAM family member 6 NM_001184714.2 100% 100%
2 human 114836 SLAMF6 SLAM family member 6 NM_052931.5 99.6% 99.6% 795_796insGCA
3 human 114836 SLAMF6 SLAM family member 6 XM_017000215.2 95.6% 94.3% (many diffs)
4 human 114836 SLAMF6 SLAM family member 6 XM_017000216.1 85.2% 85.2% 47_48ins147
5 human 114836 SLAMF6 SLAM family member 6 NM_001184715.2 84.9% 84.9% 47_48ins147;648_649insGCA
6 human 114836 SLAMF6 SLAM family member 6 NM_001184716.2 66.5% 66.5% 49_50ins333
7 human 114836 SLAMF6 SLAM family member 6 XM_017000217.1 66.2% 66.2% 49_50ins333;462_463insGCA
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1065
ORF length:
996
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gttgtggctg ttccaatcgc tcctgtttgt cttctgcttt ggcccaggga
121atgtagtttc acaaagcagc ttaaccccat tgatggtgaa cgggattctg ggggagtcag
181taactcttcc cctggagttt cctgcaggag agaaggtcaa cttcatcact tggcttttca
241atgaaacatc tcttgccttc atagtacccc atgaaaccaa aagtccagaa atccacgtga
301ctaatccgaa acagggaaag cgactgaact tcacccagtc ctactccctg caactcagca
361acctgaagat ggaagacaca ggctcttaca gagcccagat atccacaaag acctctgcaa
421agctgtccag ttacactctg aggatattaa gacaactgag gaacatacaa gttaccaatc
481acagtcagct atttcagaat atgacctgtg agctccatct gacttgctct gtggaggatg
541cagatgacaa tgtctcattc agatgggagg ccttgggaaa cacactttca agtcagccaa
601acctcactgt ctcctgggac cccaggattt ccagtgaaca ggactacacc tgcatagcag
661agaatgctgt cagtaattta tccttctctg tctctgccca gaagctttgc gaagatgtta
721aaattcaata tacagatacc aaaatgattc tgtttatggt ttctgggata tgcatagtct
781tcggtttcat catactgctg ttacttgttt tgaggaaaag aagagattcc ctatctttgt
841ctactcagcg aacacagggc cccgcagagt ccgcaaggaa cctagagtat gtttcagtgt
901ctccaacgaa caacactgtg tatgcttcag tcactcattc aaacagggaa acagaaatct
961ggacacctag agaaaatgat actatcacaa tttactccac aattaatcat tccaaagaga
1021gtaaacccac tttttccagg gcaactgccc ttgacaatgt cgtgttgcca actttcttgt
1081acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
1141gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)

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