Construct: ORF ccsbBroad304_05384

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001171.1_s304c1, BRDN0000460513
Derived from:
ccsbBroadEn_05384
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CYB561D1 (284613)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_05384
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 284613 CYB561D1 cytochrome b561 family memb... NM_182580.2 100% 100%
2 human 284613 CYB561D1 cytochrome b561 family memb... NM_001134400.1 87.6% 87.6% (many diffs)
3 human 284613 CYB561D1 cytochrome b561 family memb... XM_005270775.2 79.8% 73% (many diffs)
4 human 284613 CYB561D1 cytochrome b561 family memb... XM_011541286.2 79.8% 73% (many diffs)
5 human 284613 CYB561D1 cytochrome b561 family memb... XM_005270776.3 74.6% 74.6% 0_1ins174
6 human 284613 CYB561D1 cytochrome b561 family memb... XM_017001079.1 74.6% 74.6% 0_1ins174
7 human 284613 CYB561D1 cytochrome b561 family memb... NM_001134402.1 74.5% 73.3% (many diffs)
8 human 284613 CYB561D1 cytochrome b561 family memb... XM_005270777.2 71.1% 71.1% 0_1ins198
9 human 284613 CYB561D1 cytochrome b561 family memb... XM_011541287.3 69% 61.8% (many diffs)
10 human 284613 CYB561D1 cytochrome b561 family memb... NM_001134403.1 37.2% 24.3% 149_252del;399_400ins392
11 mouse 72023 Cyb561d1 cytochrome b-561 domain con... NM_001081320.2 90.2% 90.3% (many diffs)
12 mouse 72023 Cyb561d1 cytochrome b-561 domain con... XM_006502126.2 70.3% 71.6% (many diffs)
13 mouse 72023 Cyb561d1 cytochrome b-561 domain con... NM_028061.1 66.3% 67.6% (many diffs)
14 mouse 72023 Cyb561d1 cytochrome b-561 domain con... XM_006502128.2 66.3% 67.6% (many diffs)
15 mouse 72023 Cyb561d1 cytochrome b-561 domain con... XM_006502127.2 66.2% 65.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
756
ORF length:
687
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gcagcccctg gaggtaggtc tggttcccgc tccagctggg gagccgagac
121tgacccgctg gctgcggaga ggcagtggga tcttggcgca cctggtagct ttgggcttca
181ccatctttct gacagcgctg tcccggccag gaaccagtct tttctcctgg caccctgtat
241tcatggcctt ggcgttctgc ctctgcatgg ctgaagccat cctactcttc tcacctgaac
301actccctgtt cttcttctgc tcccgaaaag cacggatccg gctccactgg gcagggcaga
361ccctagccat cctctgtgca gctctgggcc tgggcttcat catctccagc aggacccgca
421gtgagctgcc tcatctggtg tcctggcaca gctgggtggg agccctgaca ctgctggcca
481ctgctgtcca ggcactgtgt gggctctgcc tcctttgtcc ccgggcagcc agggtctcaa
541gggtggctcg cctcaagctc taccatctga catgtggact ggtggtctac ctgatggcta
601cagtaacggt gcttctgggc atgtactcag tatggttcca ggcccagatc aaaggtgcgg
661cctggtacct gtgcctggca ctgcccgtct atccagccct ggtgatcatg caccagattt
721ccagatccta cttgccgagg aagaaaatgg aaatgttgcc aactttcttg tacaaagtgg
781ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
841ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)

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