Construct: ORF ccsbBroad304_06252

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005996.1_s304c1, BRDN0000407653
Derived from:
ccsbBroadEn_06252
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GALNT2 (2590)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06252
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2590 GALNT2 polypeptide N-acetylgalacto... NM_004481.5 99.9% 100% 1467G>A
2 human 2590 GALNT2 polypeptide N-acetylgalacto... NM_001291866.2 92.8% 92.6% (many diffs)
3 human 2590 GALNT2 polypeptide N-acetylgalacto... XM_017000963.2 82% 78.4% (many diffs)
4 human 2590 GALNT2 polypeptide N-acetylgalacto... XM_017000964.2 76.6% 72.6% (many diffs)
5 human 2590 GALNT2 polypeptide N-acetylgalacto... XM_017000965.1 75.9% 71.9% (many diffs)
6 human 2590 GALNT2 polypeptide N-acetylgalacto... XM_017000966.1 71.8% 68.1% (many diffs)
7 mouse 108148 Galnt2 UDP-N-acetyl-alpha-D-galact... NM_139272.2 87.2% 96.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1779
ORF length:
1713
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcg gcggcgctcg cggatgctgc tctgcttcgc cttcctgtgg gtgctgggca
121tcgcctacta catgtactcg gggggcggct ctgcgctggc cgggggcgcg ggcggcggcg
181ccggcaggaa ggaggactgg aatgaaattg accccattaa aaagaaagac cttcatcaca
241gcaatggaga agagaaagca caaagcatgg agaccctccc tccagggaaa gtacggtggc
301cagactttaa ccaggaagct tatgttggag ggacgatggt ccgctccggg caggaccctt
361acgcccgcaa caagttcaac caggtggaga gtgataagct tcgaatggac agagccatcc
421ctgacacccg gcatgaccag tgtcagcgga agcagtggcg ggtggatctg ccggccacca
481gcgtggtgat cacgtttcac aatgaagcca ggtcggccct actcaggacc gtggtcagcg
541tgcttaagaa aagcccgccc catctcataa aagaaatcat cttggtggat gactacagca
601atgatcctga ggacggggct ctcttgggga aaattgagaa agtgcgagtt cttagaaatg
661atcgacgaga aggcctcatg cgctcacggg ttcggggggc cgatgctgcc caagccaagg
721tcctgacctt cctggacagt cactgcgagt gtaatgagca ctggctggag cccctcctgg
781aaagggtggc ggaggacagg actcgggttg tgtcacccat catcgatgtc attaatatgg
841acaactttca gtatgtgggg gcatctgctg acttgaaggg cggttttgat tggaacttgg
901tattcaagtg ggattacatg acgcctgagc agagaaggtc ccggcagggg aacccagtcg
961cccctataaa aacccccatg attgctggtg ggctgtttgt gatggataag ttctattttg
1021aagaactggg gaagtacgac atgatgatgg atgtgtgggg aggagagaac ctagagatct
1081cgttccgcgt gtggcagtgt ggtggcagcc tggagatcat cccgtgcagc cgtgtgggac
1141acgtgttccg gaagcagcac ccctacacgt tcccgggtgg cagtggcact gtctttgccc
1201gaaacacccg ccgggcagca gaggtctgga tggatgaata caaaaatttc tattatgcag
1261cagtgccttc tgctagaaac gttccttatg gaaatattca gagcagattg gagcttagga
1321agaaactcag ctgcaagcct ttcaaatggt accttgaaaa tgtctatcca gagttaaggg
1381ttccagacca tcaggatata gcttttgggg ccttgcagca gggaactaac tgcctcgaca
1441ctttgggaca ctttgctgat ggtgtggttg gagtttatga atgtcacaat gctgggggaa
1501accaggaatg ggccttgacg aaggagaagt cagtgaagca catggatttg tgccttactg
1561tggtggaccg ggcaccgggc tctcttataa agctgcaggg ctgccgagaa aatgacagca
1621gacagaaatg ggaacagatc gagggcaact ccaagctgag gcacgtgggc agcaacctgt
1681gcctggacag tcgcacggcc aagagcgggg gcctaagcgt ggaggtgtgt ggcccggccc
1741tttcgcagca gtggaagttc acgctcaacc tgcagcagta cccaactttc ttgtacaaag
1801tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
1861gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)