Construct: ORF ccsbBroad304_06395

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002812.1_s304c1, BRDN0000410003
Derived from:
ccsbBroadEn_06395
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HOXC11 (3227)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06395
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3227 HOXC11 homeobox C11 NM_014212.4 99.6% 99.3% 36T>G;143C>T;491A>N
2 mouse 109663 Hoxc11 homeobox C11 NM_001024842.1 93.5% 97% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
978
ORF length:
912
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtt taactcggtc aacctgggca acttctgctc gccgtcgcgc aaggagaggg
121gcgcagattt cggcgagcga gggagctgcg cctccaacct ctatctgccc agttgcactt
181actacatgcc cgagttctcc acggtcttct ccttcctgcc ccaggccccc tctcgtcaga
241tctcctatcc ctactcggcc caagtgcccc cggtccggga ggtctcctac ggcctggagc
301catccggcaa gtggcaccat cggaacagct actcctcctg ctatgcggcg gccgacgagc
361ttatgcaccg ggagtgcctg cctccttcca ccgtcaccga gatcctcatg aaaaacgaag
421gctcctacgg cggccaccac caccccagcg ccccgcacgc aacccccgcc ggcttctact
481cctcagtcaa caagaacagc gtcctgcctc aagccttcga ccgtttcttc gacaacgcct
541actgcggtgg cggcgncccg cccgccgagc ccccctgctc cggcaagggc gaggccaagg
601gggagcccga ggcacccccg gcctcgggac tggcgtcccg ggctgaggcg ggtgccgagg
661cggaggctga ggaggagaac acaaatccca gctcgtccgg ttcagcccac tccgtggcca
721aggagccggc caaaggagcc gcccccaacg ccccccgcac ccgcaagaag cgctgccctt
781attcgaaatt ccagatccgg gaactggagc gagagttttt cttcaacgtg tatatcaaca
841aagagaagcg gctgcagctg tcccggatgc tgaacctgac ggaccgacaa gtgaaaattt
901ggtttcagaa cagaaggatg aaagaaaaga aactgagcag agaccggctg cagtatttct
961cgggaaatcc tctgctgtac ccaactttct tgtacaaagt ggttggtaag cctatcccta
1021accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
1081agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)