Construct: ORF ccsbBroad304_06872

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001224.1_s304c1, BRDN0000398936
Derived from:
ccsbBroadEn_06872
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ROM1 (6094)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06872
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6094 ROM1 retinal outer segment membr... NM_000327.3 99.8% 100% 669G>C;676C>T
2 mouse 19881 Rom1 rod outer segment membrane ... NM_009073.4 85.1% 84.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1119
ORF length:
1053
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc gccggtgttg cccctggtgc tgcccctgca gccccgcatc cgcctggcac
121aagggctctg gctcctctcc tggctgctgg cgctggctgg tggcgtcatc ctcctctgta
181gtgggcacct cctggtccag ctaaggcacc ttggcacctt cctggctccc tcctgtcagt
241tccctgtcct gccccaggct gccctggcag cgggcgcggt ggctctgggc acaggactag
301tgggtgtagg agccagccgg gcaagtctga atgcagctct ataccctccc tggcgagggg
361tcctgggccc gctgctggtg gctggcacgg ctggtggggg ggggctcctg gtcgtcgccc
421tcgggctagc cctggctttg cctgggagtc tggatgaggc gctggaggag ggcctggtga
481ctgccttggc tcactacaag gacacagagg tgcctgggca ctgtcaggcc aaaaggctgg
541tggatgagct gcaactgagg taccactgct gcgggcgcca cgggtacaag gattggtttg
601gggtccagtg ggtcagcagc cgttacctgg atcccggtga ccgggatgtg gctgaccgga
661tccagagcaa tgtagaaggc ctatacctga ctgatggggt ccctttctcc tgttgcaacc
721cccactcacc ccgcccttgc ttgcaaaacc gtctttcaga ctcctacgcc caccccctgt
781tcgatccccg acaacccaac caaaacctct gggcccaagg gtgccatgag gtgctgctgg
841agcacttgca ggacttggca ggcacactgg gtagcatgct ggctgtcacc ttcctactgc
901aggctctggt gctccttggc ctgcggtacc tgcaaacagc actggagggg cttggagggg
961tcattgatgc gggaggagag acccagggct atctctttcc cagtgggctg aaagatatgc
1021tgaaaacagc atggctacag ggaggggttg cctgcaggcc agcacctgag gaggccccac
1081caggagaagc acctcccaag gaggatctat ctgaggccta cccaactttc ttgtacaaag
1141tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
1201gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)