Construct: ORF ccsbBroad304_07527
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012288.1_s304c1, BRDN0000403534
- Derived from:
- ccsbBroadEn_07527
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HNRNPDL (9987)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_07527
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9987 | HNRNPDL | heterogeneous nuclear ribon... | NM_031372.3 | 100% | 100% | |
| 2 | human | 9987 | HNRNPDL | heterogeneous nuclear ribon... | NM_001207000.1 | 86.4% | 86.4% | 1020_1021ins171 |
| 3 | human | 9987 | HNRNPDL | heterogeneous nuclear ribon... | NR_003249.2 | 29.5% | 1_535del;1796_4262del | |
| 4 | mouse | 50926 | Hnrnpdl | heterogeneous nuclear ribon... | NM_016690.4 | 93.4% | 97.1% | (many diffs) |
| 5 | mouse | 50926 | Hnrnpdl | heterogeneous nuclear ribon... | XM_006535074.3 | 93.4% | 97.1% | (many diffs) |
| 6 | mouse | 50926 | Hnrnpdl | heterogeneous nuclear ribon... | XM_011249510.2 | 93.4% | 97.1% | (many diffs) |
| 7 | mouse | 50926 | Hnrnpdl | heterogeneous nuclear ribon... | XM_006535076.4 | 80.3% | 83.5% | (many diffs) |
| 8 | mouse | 50926 | Hnrnpdl | heterogeneous nuclear ribon... | XM_006535077.4 | 80.3% | 83.5% | (many diffs) |
| 9 | mouse | 50926 | Hnrnpdl | heterogeneous nuclear ribon... | XM_030254661.1 | 80.3% | 83.5% | (many diffs) |
| 10 | mouse | 50926 | Hnrnpdl | heterogeneous nuclear ribon... | XR_389282.3 | 43.2% | (many diffs) | |
| 11 | mouse | 50926 | Hnrnpdl | heterogeneous nuclear ribon... | XR_003955673.1 | 42.9% | (many diffs) | |
| 12 | mouse | 50926 | Hnrnpdl | heterogeneous nuclear ribon... | NR_152866.1 | 41.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1326
- ORF length:
- 1260
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga ggtcccgccc aggctttccc atgtgccgcc gccattgttc ccctccgctc 121 ccgctacttt agcctcccgc agcctctccc attggcggcc gcggccgccg cggcagctag 181 ccccgctcct cccttcgctc gctcccagct ccgcccggca gggggcgcgc cgggcccagc 241 gccacgtcac cgcccagcag ccctcccgat tggcgggcgg ggcggctata aagggagggc 301 gcaggcggcg cccggatctc ttccgccgcc attttaaatc cagctccata caacgctccg 361 ccgccgctgc tgccgcgacc cggactgcgc gccagcaccc ccctgccgac agctccgtca 421 ctatggagga tatgaacgag tacagcaata tagaggaatt cgcagaggga tccaagatca 481 acgcgagcaa gaatcagcag gatgacggta aaatgtttat tggaggcttg agctgggata 541 caagcaaaaa agatctgaca gagtacttgt ctcgatttgg ggaagttgta gactgcacaa 601 ttaaaacaga tccagtcact gggagatcaa gaggatttgg atttgtgctt ttcaaagatg 661 ctgctagtgt tgataaggtt ttggaactga aagaacacaa actggatggc aaattgatag 721 atcccaaaag ggccaaagct ttaaaaggga aagaacctcc caaaaaggtt tttgtgggtg 781 gattgagccc ggatacttct gaagaacaaa ttaaagaata ttttggagcc tttggagaga 841 ttgaaaatat tgaacttccc atggatacaa aaacaaatga aagaagagga ttttgtttta 901 tcacatatac tgatgaagag ccagtaaaaa aattgttaga aagcagatac catcaaattg 961 gttctgggaa gtgtgaaatc aaagttgcac aacccaaaga ggtatatagg cagcaacagc 1021 aacaacaaaa aggtggaaga ggtgctgcag ctggtggacg aggtggtacg aggggtcgtg 1081 gccgaggtca gggccaaaac tggaaccaag gatttaataa ctattatgat caaggatatg 1141 gaaattacaa tagtgcctat ggtggtgatc aaaactatag tggctatggc ggatatgatt 1201 atactgggta taactatggg aactatggat atggacaggg atatgcagac tacagtggcc 1261 aacagagcac ttatggcaag gcatctcgag ggggtggcaa tcaccaaaac aattaccagc 1321 catactaccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg 1381 gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca 1441 acctctggat ta