Construct: ORF ccsbBroad304_08299
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010269.1_s304c1, BRDN0000410209
- Derived from:
- ccsbBroadEn_08299
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NELFCD (51497)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_08299
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51497 | NELFCD | negative elongation factor ... | NM_198976.4 | 98.4% | 98.4% | 0_1ins27;657C>T |
| 2 | human | 51497 | NELFCD | negative elongation factor ... | XR_244142.3 | 74.3% | (many diffs) | |
| 3 | mouse | 57314 | Nelfcd | negative elongation factor ... | NM_020580.3 | 87.3% | 97.2% | (many diffs) |
| 4 | mouse | 57314 | Nelfcd | negative elongation factor ... | XM_006499946.2 | 79.4% | 89.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1836
- ORF length:
- 1770
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc gggggccgtg ccgggcgcca tcatggacga ggactactac gggagcgcgg 121 ccgagtgggg cgacgaggct gacggcggcc agcaggagga tgattctgga gaaggagagg 181 atgatgcgga ggttcagcaa gaatgcctgc ataaattttc cacccgggat tatatcatgg 241 aaccctccat cttcaacact ctgaagaggt attttcaggc aggagggtct ccagagaatg 301 ttatccagct cttatctgaa aactacaccg ctgtggccca gactgtgaac ctgctggccg 361 agtggctcat tcagacaggt gttgagccag tgcaggttca ggaaactgtg gaaaatcact 421 tgaagagttt gctgatcaaa cattttgacc cccgcaaagc agattctatt tttactgaag 481 aaggagagac cccagcgtgg ctggaacaga tgattgcaca taccacgtgg cgggaccttt 541 tttataaact ggctgaagcc catccagact gtttgatgct gaacttcacc gttaagctta 601 tttctgacgc agggtaccag ggggagatca ccagtgtgtc cacagcatgc cagcagctag 661 aagtgttctc gagagtgctc cggacctctc tagctacaat tttagatgga ggagaagaaa 721 accttgaaaa aaatctccct gagtttgcta agatggtgtg ccacggggag cacacgtacc 781 tgtttgccca ggccatgatg tccgtgctgg cccaggagga gcaggggggc tccgctgtgc 841 gcaggatcgc ccaggaagtg cagcgctttg cccaggagaa aggtcatgac gccagtcaga 901 tcacactagc cttgggcaca gctgcctcct accccagggc ctgccaggct ctcggggcca 961 tgctgtccaa aggagccctg aaccctgctg acatcaccgt cctgttcaag atgttcacaa 1021 gcatggaccc tcctccggtt gaacttatcc gcgttccagc cttcctggac ctgttcatgc 1081 agtcactctt taaaccaggg gctcggatca accaggacca caagcacaaa tacatccaca 1141 tcttggcgta cgcagcaagc gtggttgaga cctggaagaa gaacaagcga gtgagcatca 1201 ataaagatga gctgaagtca acgtcaaaag ctgtcgaaac cgttcacaat ttgtgttgca 1261 acgagaacaa aggggcctct gaactagtgg cagaattgag cacactttat cagtgtatta 1321 ggtttccagt ggtagcaatg ggtgtgctga agtgggtgga ttggactgta tcagaaccaa 1381 ggtactttca gctgcagact gaccataccc ctgtccacct ggcgttgctg gatgagatca 1441 gcacctgcca ccagctcctg cacccccagg tcctgcagct gcttgttaag ctttttgaga 1501 ctgagcactc ccagctggac gtgatggagc agcttgagtt gaagaagaca ctgctggaca 1561 ggatggttca cctgctgagt cgaggttatg tacttcctgt tgtcagttac atccgaaagt 1621 gtctggagaa gctggacact gacatttcac tcattcgcta ttttgtcact gaggtgctgg 1681 acgtcattgc tcctccttat acctctgact tcgtgcaact tttcctcccc atcctggaga 1741 atgacagcat cgcaggtacc atcaaaacgg aaggcgagca tgaccctgtg acggagttta 1801 tagctcactg caaatctaac ttcatcatgg tgaactaccc aactttcttg tacaaagtgg 1861 ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg 1921 ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta