Construct: ORF ccsbBroad304_08632

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000700.1_s304c1, BRDN0000402007
Derived from:
ccsbBroadEn_08632
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHA3 (56145)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08632
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56145 PCDHA3 protocadherin alpha 3 NM_031497.1 99.9% 99.8% 866T>C
2 human 56145 PCDHA3 protocadherin alpha 3 NM_018906.3 84.4% 83.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2541
ORF length:
2472
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gttgttctcc tggcgagaag atcctggagc ccagtgcctg ctgctttctc
121ttctgctcct cgcagcctcg gaggtgggga gcggccagct ccactactcc gtctctgagg
181aggccaagca tggcaccttc gtgggccgca tcgcgcagga cctggggctg gagctggcgg
241agctggtgcc gcgcctgttc cgggtggcgt ccaaaagaca cggggacctt ctggaggtaa
301atctgcagaa tggcattttg tttgtgaatt ctcggataga ccgcgaggaa ctgtgcgggc
361ggagcgcgga gtgcagcatc cacctggagg tgatcgtgga caggccgctg caggttttcc
421atgtggaggt ggaagtgaag gacattaatg acaacgcgcc agtttttcca atggctgtaa
481agaatctgtt tatttccgaa tcccgacagc ctggctctcg gttttcgcta gagggcgcat
541cagatgcaga tatcggaaca aattcgttgt tgacttacag tcttgattcc actgaatatt
601ttaccttgga cgttaaaaga aatgatgagg aaattaaatc ccttggactc gtgttgaaaa
661aaaatttaaa tcgagaggac actcctaagc attatttact aataacagca attgatggtg
721ggaaaccaga gctcactggc acgactcaac taaagatcac tgttttagat gtaaacgaca
781acgccccagc gtttgagagg acgatctata aagtcagatt actcgaaaat gcaccaaatg
841gtaccctagt ggtgaccgtt aacgccaccg atttggatga aggagtaaat aaggatatcg
901cgtattcttt caatacggac atgtcagcag atactctgtc aaaattccat ttagatccag
961tcaatggaca aatcagtgta aagggtaaca tagatttcga ggaaagtaag tcatatgaaa
1021tccaggtaga agccacggat aaaggaaatc ccccaatgtc agatcactgc acagttctac
1081tcgaaattgt ggacatcaat gataatgtac ctgagttagt tattcaatca ctatctttac
1141ctgtattaga agactctcca cttagcacag tcatcgctct gatcagcgtg tccgaccgcg
1201actcaggagt caatggacag gtcacctgct cgctgacgcc ccacgtcccc ttcaagctgg
1261tgtccacctt caagaattac tactcattgg tgctggacag ccctctggac cgcgagagcg
1321tgtcggccta tgagctggtg gtgactgctc gggacggggg ctcgccttca ctgtgggcca
1381cggccagcgt gtccgtggag gtggccgacg tgaacgacaa tgcgccggca ttctcgcagt
1441ccgagtacac ggtgttcgtg aaggagaaca acccgccggg ctgccacatc ttcacggtgt
1501ctgcgcggga cgcggacgcg caggagaacg ccctggtgtc ctactcgctg gtggaacggc
1561gggtggggga gcgcgcgctg tcgagctacg tgtcggtaca cgcggagagc ggcaaggtgt
1621acgcgctgca gccgctggac cacgaggagc tagagctgct gcagttccag gtgagtgcgc
1681gcgatgcggg cgtgccgcct ctgggcagca acgtgacgct gcaggtgttc gtgctggacg
1741agaacgacaa cgcgccggca ctgctgatgc ctcgggtggg tggcatcggt ggcgcagtga
1801gcgagctggt gccgcggtca gtgggtgcgg gccacgtggt agcgaaggtg cgcgcagtgg
1861atgcagactc aggctacaac gcgtggcttt cgtatgagct gcagcctggg accggcggtg
1921cgcgcatccc gtttcgcgtg gggctgtaca cgggagagat cagcacgacc cgtgccctgg
1981acgaggtgga cgccccgcgc catcgcctac tggtgctggt gaaggaccac ggtgaaccct
2041cattgaccgc cacggccact gtgctggtgt cgctggtgga gagtggccag gcacccaagg
2101cctcgtccca ggcgtccgct ggcgccacgg gcccggaagc tgcactggtg gatgtcaacg
2161tgtacttgat cgtcgccatc tgcgcggtgt ccagtctgtt ggtgctcaca ctgctgctat
2221atactgctct gcggtgctcc gcgccgccaa ccgaaggcga ctgtgggccg ggcaagccca
2281cgctggtgtg ctccagcgcg gtggggagct ggtcatactc gcagcagagg cagcagaggg
2341tgtgctctgg agaggggttg cccaagaccg acctcatggc ttttagccct agccttcctc
2401cttgtccaat tagccgggat agagaggaga aacaggatgt ggacgttgat ctctcagcca
2461aagtgagtaa tttttattta ttctttccaa aatgtctttg tttttcattc ctcaatgttt
2521ccactcctct ggaaatacat ttgccaactt tcttgtacaa agtggttggt aagcctatcc
2581ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
2641ttaagtcgac aatcaacctc tggatta

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