Construct: ORF ccsbBroad304_09298
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017892.1_s304c1, BRDN0000406737
- Derived from:
- ccsbBroadEn_09298
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- ZNF622 (90441)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_09298
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 90441 | ZNF622 | zinc finger protein 622 | NM_033414.3 | 99.9% | 18C>A | |
| 2 | mouse | 52521 | Zfp622 | zinc finger protein 622 | NM_144523.2 | 83.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 81
- ORF length:
- 15
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc gacgtacacc tgaataactt gccgggtggc gttccgcgac gcggacatgc 121 agcgggccca ctataagacg gactggcacc gctacaacct gcggcggaag gtggccagca 181 tggccccagt gaccgccgag ggcttccagg agcgagtgcg ggcgcagcgg gccgtcgcgg 241 aggaggagag caagggctcg gccacctact gcaccgtttg cagtaagaag tttgcctctt 301 tcaacgccta cgagaaccac ctcaagtccc ggcgtcacgt tgagctggag aagaaggccg 361 tgcaggcagt gaatcggaaa gtggagatga tgaatgaaaa gaacttggag aaaggactgg 421 gcgtggacag tgtggacaag gatgccatga acgcggccat ccagcaggcc atcaaggccc 481 agccgtccat gtctcccaag aaggcgcccc cagcgcctgc aaaggaggcc aggaatgtcg 541 tggccgtggg tactggtggc cgtgggaccc acgaccgaga cccgagtgag aaaccacccc 601 ggctccagtg gtttgaacag caggcgaaga agttggcaaa gcagcaggag gaggacagcg 661 aggaggagga agaggacctg gatggagacg attgggaaga tattgattct gatgaagaat 721 tggaatgtga ggatactgaa gcaatggacg atgtggtgga gcaggatgca gaggaggaag 781 aggctgagga aggcccaccc cttggtgcca tccctatcac ggactgctta ttttgttccc 841 atcattccag ctcgctgatg aagaatgtgg ctcacatgac caaagaccac agtttcttta 901 ttcctgatat agaatatctt tcagatatta agggactgat taaatacttg ggagagaaag 961 ttggtgttgg caagatttgc ttgtggtgca acgagaaagg gaagtccttc tactccacag 1021 aagctgtaca ggcacatatg aatgacaaaa gccactgtaa gctcttcaca gatggcgatg 1081 ctgctttgga atttgcagac ttctatgatt ttaggagtag ctatccagat cacaaggaag 1141 gggaggaccc caataaggct gaggagttgc cctcagaaaa gaacttggaa tatgatgatg 1201 aaaccatgga attgattctg ccttctggtg ccagagtggg tcatcgctcc ttgatgagat 1261 actacaaaca gcgatttggc ttgtcaagag ctgtggcagt tgccaaaaat cggaaggccg 1321 tgggccgagt acttcagcag tacagagccc tgggatggac tggcagcaca ggagcggctc 1381 ttatgcgaga gcgagacatg cagtatgtcc aaaggatgaa atcaaaatgg atgctgaaga 1441 caggaatgaa gaacaatgcc accaagcaga tgcactttcg ggtccaagtg agattctgcc 1501 caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt 1561 ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga 1621 tta