Construct: ORF ccsbBroad304_10471

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014654.1_s304c1, BRDN0000410267
Derived from:
ccsbBroadEn_10471
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to frame shift)
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EFCAB7 (84455)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10471
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84455 EFCAB7 EF-hand calcium binding dom... NM_032437.4 99.7% 99.3% (many diffs)
2 human 84455 EFCAB7 EF-hand calcium binding dom... XM_006710977.1 99.7% 99.3% (many diffs)
3 human 84455 EFCAB7 EF-hand calcium binding dom... XM_006710976.3 97.7% 97.3% (many diffs)
4 human 84455 EFCAB7 EF-hand calcium binding dom... XM_005271274.4 96% 95.7% (many diffs)
5 human 84455 EFCAB7 EF-hand calcium binding dom... XM_011542301.2 94.1% 93.7% (many diffs)
6 human 84455 EFCAB7 EF-hand calcium binding dom... XR_001737487.2 79% (many diffs)
7 human 84455 EFCAB7 EF-hand calcium binding dom... XR_001737486.2 68.7% (many diffs)
8 human 84455 EFCAB7 EF-hand calcium binding dom... XR_946779.3 59.4% (many diffs)
9 human 84455 EFCAB7 EF-hand calcium binding dom... XM_017002548.1 58.5% 54.9% (many diffs)
10 human 84455 EFCAB7 EF-hand calcium binding dom... XR_001737488.1 55.1% (many diffs)
11 human 84455 EFCAB7 EF-hand calcium binding dom... XR_002957809.1 49.2% (many diffs)
12 mouse 230500 Efcab7 EF-hand calcium binding dom... NM_145549.1 85.6% 82.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1953
ORF length:
1887
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc gatcagtcca cgaagcgatg caactttctc cagtcagaaa tcaacacctt
121cagagagtcc tcgaacaaag aaatttccac taactgaaga ggaaatattt tatatgaatt
181gtagagctgc ctacttaact gtcttcaaaa gcagcttgga aaacattatt tctaaagatc
241aactttactt agctcttcag catgcaggaa gaaatccatc ccaaaagacc attaataagt
301attggactcc tcaaactgcc aaactgaatt ttgatgattt ttgtataatt ttaaggaagg
361aaaaacctac ttcaaaagca gaactactaa aatcttttaa gcaattagat gtaaatgatg
421atggctgtat tttacacact gacctttata aatttctaac aaagagaggt gagaagatga
481ctcgagaaga agtaaatgcc ataataaatt tggctgatgt aaatgctgat ggcaaatttg
541actacatcaa gttttgtaaa ttatatatga caaccaacga gcaatgtctc aagactacac
601tagaaaaact agaggttgac agtaaattga tgcgtcacca gtttggaaac cacatcgaag
661ggtcccctga aagggaccca tcaccagtac caaaaccatc acctaaaatc acaagaaaaa
721ctgatccaga aacattctta aataaaggtg acaccaggag ttctttactg tcagcaacca
781ggaagttcaa aacatctgtt tccttcatag ttaccatggg ggctaatggt aaccgaaact
841caaagttaac ggagccaaat ttaataaagg actggcaaca catgcaatca aaaggttgct
901tcttcttaga agaagatggt gaaatcatta gtcatcagta caggatgcaa atagctcaga
961ggtccatggt ttatctaaca attaagccat taaacctgag tcaagttgaa ggaaaaccat
1021ccccttggtt atccgttgat actgccttgt atattctcaa ggaaaatgag agtcaagcaa
1081atctacagct tgtgtgtttt accgaactac gaaatagaga agtgtttgga tggactggtg
1141aactaggacc tggaatttac tggttaattc cttccacaac tggctgtaag ctgaggaaaa
1201aaataaaacc agtaacagat gaagcccaac ttgtatatag agatgaaaca ggggaattat
1261tccttacaaa ggaatttaag tctactttat cagatatatt tgaagtaatt gatttagatg
1321gaaatggtct tcttagcctt gaagaatata atttttttga attgagaaca agtggtgaga
1381aatgtgatga agatgcttgg gctgtctgca gagagaattt tgatacaaag aggaatgaac
1441taacaagaca aggatttatg gatttgaatc taatggaagc taatgatcga gaaggagatc
1501cttgtgacct ttgggtaact ctacactcta tgggctacaa taaagctctg gagttgacag
1561aggcatgtcc atttgtcatt gatatctatg cagaaaaatg caagccaaaa attaaagctg
1621tccatatgga ggcatgtagt ggacaacttg agaaggccat ttgtaaatct gttcttagca
1681acggtgatgc caaagtaatg gatggctatg aaaatataat cgtgcatact tacagttgtg
1741acacctggat aacgtcagtt attgaaaaca agtcagatga gaaagtgatt attcacatca
1801gcaatgagct aagtaaaaac tgcataaaca acagaggact caacatattt gcagtagaag
1861tgggacccaa atctacaatg gtttgtcaac atgtaatgcc tttgaatgaa cgacaagaat
1921ggatatatta ttgtatatat tctcttattc ttacccaact ttcttgtaca aagtggttgg
1981taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag ctagcgctaa
2041ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)