Construct: ORF ccsbBroad304_11670
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015973.1_s304c1, BRDN0000399172
- Derived from:
- ccsbBroadEn_11670
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SETX (23064)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_11670
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23064 | SETX | senataxin | XM_017014496.1 | 96.6% | 96.6% | 1740_1826del |
| 2 | human | 23064 | SETX | senataxin | NM_001351527.1 | 30.9% | 30.9% | 1_5547del |
| 3 | human | 23064 | SETX | senataxin | NM_015046.7 | 30.9% | 30.9% | 1_5547del |
| 4 | human | 23064 | SETX | senataxin | NM_001351528.2 | 30.5% | 30.5% | 1_5547del;7287_7373del |
| 5 | human | 23064 | SETX | senataxin | XM_005272172.3 | 30.5% | 30.5% | 1_5547del;7287_7373del |
| 6 | human | 23064 | SETX | senataxin | XM_005272173.3 | 30.5% | 30.5% | 1_5547del;7287_7373del |
| 7 | human | 23064 | SETX | senataxin | XM_011518404.3 | 30.5% | 30.5% | 1_5547del;7287_7373del |
| 8 | human | 23064 | SETX | senataxin | XM_011518405.3 | 30.5% | 30.5% | 1_5547del;7287_7373del |
| 9 | human | 23064 | SETX | senataxin | XR_001746251.1 | 23.9% | 1_5102del;7587_10385del | |
| 10 | human | 23064 | SETX | senataxin | XR_929739.2 | 23.1% | 1_5463del;7948_10746del | |
| 11 | human | 23064 | SETX | senataxin | XM_011518406.2 | 20.9% | 20.6% | (many diffs) |
| 12 | human | 23064 | SETX | senataxin | XM_011518407.1 | 19.4% | 19.3% | (many diffs) |
| 13 | human | 23064 | SETX | senataxin | XM_011518408.3 | 12.6% | 12.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2550
- ORF length:
- 2484
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgcg taatgggaaa actgagtgtt acctttccat ccagactcaa gagaactttc 121 cggccaattt aaacgaactt gtgaattgta ttgtaatcag ttctctggta actacacaaa 181 ggaagttgaa agccatgtct ctgttgggta gtcggaacca actggctaga gctgttctga 241 atccaaaccc tatggacttc tgtacaaaag atttactgac tacaacatct gagagaatta 301 ttgcgtactt aagagatttc aatgaagatc aaaagaaagc aatagaaact gcatatgcta 361 tggtgaaaca ctcaccatca gttgccaaaa tctgcttgat tcatggacca cctggaacag 421 gaaaatcaaa aactattgtt ggcctcctct atcgtctact gacagagaac cagaggaagg 481 ggcattcaga cgaaaactcc aatgccaaaa tcaaacaaaa ccgtgtcctc gtgtgtgcac 541 cttccaatgc agctgttgat gaactcatga aaaaaattat ccttgaattc aaagaaaaat 601 gtaaagacaa gaagaatcct ttaggaaact gtggagatat aaatttagta cgactgggtc 661 cagaaaagtc tattaatagt gaggttctaa agttcagttt ggacagccaa gtaaaccaca 721 gaatgaaaaa agagttacct tctcatgttc aggcgatgca taaaagaaag gaatttctag 781 attatcagct ggatgagctt tcccggcagc gagctctatg ccgaggtgga cgggaaatac 841 agaggcaaga attagatgaa aacatttcca aagtttctaa ggaaaggcag gaacttgctt 901 ctaaaattaa agaggttcaa ggacgcccac agaaaacaca gagtatcatc atcttagagt 961 cccatatcat ctgctgcacg ttgagcacaa gtggtggttt actacttgag tctgctttcc 1021 gtgggcaagg gggtgtcccc ttcagctgtg tcattgttga tgaggctgga cagtcttgtg 1081 aaattgagac tcttactcca ctcatccatc gctgcaataa gctcatccta gtaggagatc 1141 ctaagcagct ccctccgaca gtcatctcta tgaaagcaca ggagtatggc tacgaccagt 1201 caatgatggc tcgcttctgc agactgctgg aagagaatgt agaacacaac atgatcagca 1261 ggctgcccat tctacagctc actgttcagt acaggatgca tccagacata tgcctcttcc 1321 cttctaatta tgtttataac agaaacttaa aaacaaatag acagacagaa gccattcgat 1381 gttcatcaga ttggccattt cagccatacc ttgtgtttga tgttggagat ggttcagaaa 1441 gacgggataa tgactcatat ataaatgttc aagaaataaa actggtgatg gaaataatta 1501 agcttattaa agacaaaaga aaggatgtta gttttcgaaa cattggcata ataactcatt 1561 acaaggccca gaagacgatg attcagaagg atttggacaa agagttcgat agaaaaggac 1621 cagcagaagt agacactgtg gatgcattcc agggtcggca gaaggattgt gttattgtta 1681 cgtgtgtcag agcaaatagc atccaaggtt caattggatt cctggcaagt ttgcagagat 1741 tgaatgtcac catcacacga gccaagtaca gcctcttcat cctcggacat ttgaggaccc 1801 tgatggaaaa ccagcattgg aatcagctga ttcaggatgc tcagaagcgt ggtgccatta 1861 ttaagacctg tgacaaaaac tatagacatg atgcagtgaa gattctgaaa ctcaagcctg 1921 tgctgcagag aagtctcact caccctccta ccatagcccc agaggggtcc agaccccagg 1981 gtggtttgcc cagcagcaag ctagacagtg gatttgccaa gacatctgtt gctgcttctc 2041 tataccacac accctctgac tccaaggaaa ttactcttac tgttacttca aaggaccctg 2101 aaagacctcc tgttcatgac caacttcagg acccacgact gctgaagagg atgggcattg 2161 aggtcaaagg aggaatattc ctttgggatc cacaaccctc gagcccccag catcctggag 2221 caacacctcc tacgggcgag ccgggcttcc ctgtcgttca ccaggacctg agccatatac 2281 agcagcccgc tgctgtagtg gctgctctga gcagccacaa acctcccgtg cggggcgaac 2341 ctccagctgc cagtcccgag gcttccacgt gtcagagcaa atgtgatgac ccggaagagg 2401 agctctgtca caggagagag gccagggctt tcagtgaagg ggagcaggag aagtgtggtt 2461 ccgagaccca tcacaccagg aggaactcta ggtgggacaa gaggacactg gagcaggagg 2521 acagcagttc caagaaaaga aagcttttat acccaacttt cttgtacaaa gtggttggta 2581 agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc 2641 ggtggcgcgt taagtcgaca atcaacctct ggatta