Construct: ORF ccsbBroad304_12112

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002434.1_s304c1, BRDN0000399730
Derived from:
ccsbBroadEn_12112
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZSCAN32 (54925)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12112
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54925 ZSCAN32 zinc finger and SCAN domain... NM_001324346.2 37.4% 28.5% (many diffs)
2 human 54925 ZSCAN32 zinc finger and SCAN domain... NM_001284527.2 36.7% 36.2% 1_3delATG;758_759delGT;774_2091del
3 human 54925 ZSCAN32 zinc finger and SCAN domain... XM_011522555.2 36.7% 36.2% 1_3delATG;758_759delGT;774_2091del
4 human 54925 ZSCAN32 zinc finger and SCAN domain... XM_017023371.2 36.7% 36.2% 1_3delATG;758_759delGT;774_2091del
5 human 54925 ZSCAN32 zinc finger and SCAN domain... XM_005255403.2 24.2% 23.8% (many diffs)
6 human 54925 ZSCAN32 zinc finger and SCAN domain... XM_017023372.1 24.2% 23.8% (many diffs)
7 human 54925 ZSCAN32 zinc finger and SCAN domain... XM_017023373.2 24.2% 23.8% (many diffs)
8 human 54925 ZSCAN32 zinc finger and SCAN domain... NM_001324343.2 17.8% 17.3% 0_1ins396;359_360delGT;375_1692del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
834
ORF length:
768
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc tgcagtgaag agtaccgagg cacacccatc ctcaaacaag gatcccacac
121agggccagaa atcagccctc cagggtaaca gccctgactc cgaggcctcc cgtcagcgct
181tcaggcagtt ttgctaccag gaggtaactg gcccacatga agcttttagc aaactctggg
241aactctgttg tcagtggctg aggccgaaga cccactcaaa agaggaaatc ctggagctgc
301tggttttgga gcagtttctg actatcttgc cagaggagat ccagacctgg gtgagggagc
361agcatccaga aaacggcgag gaagctgtgg ctctggttga ggatgtacag agagctcctg
421gacaacaggt tctagattct gagaaggact tgaaagtact catgaaggag atggcccctt
481tgggagcaac cagagaatca ctgagatccc aatggaaaca ggaggttcag ccagaggaac
541cgacttttaa gggatcacag agctcacacc aaagaccagg ggaacagtca gaagcctggc
601ttgctcctca ggctcccagg aacctgcctc aaaacacagg tctccacgac caggagacag
661gtgctgtggt ctggacagct gggtcccagg gaccagccat gcgtgacaac agagctgtat
721ccctctgtca gcaagaatgg atgtgcccag gccctgcaca aagggccctc tacaggggtg
781ccacccagag gaaggacagt cacgtctcgc tggcaacagg tgccctgggg ctatgcccaa
841ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
901cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)

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